Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00065 ATGGCCCAGCAGTCATCTAGGCTCCAGCGTTTGCTTACTCTCCTGGACACTGGGTCAACCCAAGCCACAAGGTTGACCGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTCAAGAAGGTTTCTCAATATCTCCGTAGTAAAAATTGGGATACACGAGTTGCAGCTGCTCATGCAATTGGATCAATTGCCGAGAATGTTAAGCACACAAGTTTGACGGAACTTTTTGCTTCTGTTGTATCACAAATGAGTGAGAATGGGATATCTTGTAGCATTGAGGATCTTTGTGCATGGCCGTATTTACAATCAAAACTTACAGGAAGCGCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGTGCCTTATTAGCATCAGGGGGTCAGGAATATGATATTGGAAATGATAATATAAAGAACCCAAAGGAGCGATTGGTTCGACAGAAGCAAAGTCTTCGCCGTCGTTTAGGTCTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTCATAAGAGACGAAGATCTTATGGTGTCGAAATCAGACTCACATCTGAATGGGATTGATGGTAGAGTTTTTACTTCTTGTTCTGCACATAACATCCAGAAAATGGTGGTAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGCGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCAAAGGACCAAACAAAAAGCTGGTGTGAAGATGGAGGTACAGAGGCATCAGGTGCTCAAAGTTTGACTTCAAAAGGCACATGTCCTGATTCTCTGAATTACAGTAAGGTATTCATGGATGTTAATCACGACGACGACGGTTTTGAGCATGATGGGGATGGGCAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATAGATATGTTTGATTCCGTCTGGGAGATACGGCATGGTAGCGTGATGGCACTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCTGGAGTATTTAAACCCGACTCACACATGGGTGGGACCCTGTTTATTGAATTAGAAGACAAAAGTATGCCAAGCACATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCACGTTTCAGCTGATGAGTTTGATTCAAACTTGAAGAGGCCAAAACTTGAAGATGTGTCATCATCAACCTTTATGGATAGTGTGATGACTTGCAACAATGAAGGTGATATTGAAATCAGCATTACTTCTGAAACCCATGGATGCAATTTAACATTGGATTACGGGAATGGGCAATTTAATGGTAATTCCAATGACATGGATATGGAGTCTCACTCTGATGGCTCACATGATGCATGCAAAGAGTCTGCTAGTATAGCAGAACAGAAGATTCATTTTGATGACAATAAGATGCCCCCTGGAAATCTTATTGCGCTGAGAAATCTTCCTCAGAACTGTGAGCTGATGAACTCTGTTAAAGTGGCTAGAAGTTCCTGGCTTCAAAACTGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGCGTGTTGTCACTAGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCTTTAGGTGCTGCATTTAAGTATATGCATCCTGCACTAGTAAATGAAACATTGAACATATTGTTGGGAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATAAAATATTTGGTTGCTGTACGGCAGGAGATGCTTGCTGATTTGCTTGGACGAGTTCTTCCTGCTTGTAAATCTGGATTGGAGGACCCAGATGATGATGTCCGGGCTGTTGCTGCTGATGCTTTAATACCTGCTGCATCTGCAATTGTTTCCTTGCAGGGTCAAACATTGCATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACCAGCAGTGTAATGAATCTGCTGGCAGAAATCTATTCTCAAGAAGATATGGTGCCAAATATGTATGAAGTTTTTAGATTGGGAGACAAGGAAATGGAAAATGGAGGAGGTGGTTGTGGTGATGACGATGGGGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAACGTTTGTGGCCCTTTATGAGGCACAGTATCACATCTGTTCGTTATTCTGCAATACGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTCTGGCCCTCTTCTATATTTGGAGATACCCTCAGAATCGTATTCCAGAATCTGCTATTAGAAACAAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTATGGAGGACTTGGAGATGGCTGCAAGTTCTTACGGAGCTTCTTGGATAGAACTTGCATCTACACCATTTGGATCAGCATTAGATGCATCAAAGATGTACTGGCCTGTTGCCTTTCCACGAAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATGTGGTGTGGAATTTAGTCTTGATTCTATGAAAGGAACTATTCCACATGATAGAAATGGAGATGTTCCTATGAATTCCGTTAAGATGGTCGTTGGTGCTGATGTGGACACGTCTGTTACTCATACCCGAGTAGTTACAGCAACTGCTTTGGGATATTTTGCTTCTAAGCTGCCAGCGAGTTCTTTGAAATATGTGATTGATCCACTGTGGAGCTCTCTAACCTCTTTATCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAAGATCAGGAATTTGTCCAAAAACCTTGATGGTATCCCAGGTGCCCTCAAAGGTTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCAACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAGATGCGCAGTGAGGCTGGTCAATTACTAAATGTAGTCAAGTCTTCTGGTATGTTTGACGAGTTATTGACAGCAACACAAATTGAGTTGGATTGCTTGAGTGTGGATGATGCCATTGGTTTTGCTTCAAAAATTCCAGCTTTGTGTAATGATAGTTCTTCAAATGAATCCTTGGCAAAGAACATCATGGATGATATTGAGTCCTCCAAACAGAGACTATTGACAACTTCTGGATATTTAAAATGTGTTCAGAGCAACTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCAGTTGTCTGGATGTCGGAATTTCCTACACGACTTACGCCAATCATTTTGCCTTTGATGGCTTCAATCAGACGAGAGCAGGAGGAAATACTCCAAATGAAGTCTGCTGAGGCCCTTGCCGAGCTAATGTATCACTGTGTTGCGCGTAAACCTTGCCCCAATGATAAATTAATCAAGAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCCCTTTGTACCATTGAGAATATCGATGACCAAGGTCTTCTGTCTTTTAAAACTCCTGTGAGCAAACAGAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGTTCAAAGGTGGAGGGATTTTTAAGTAGACGAGGATCTGAGCTATCATTGAGGCTTCTATGTGAAAAGTTTGGTGCGTCATTATTTGACAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCTGTACCCGTCATTGAGGAAAAGCAAGCTACTGTGTCTATTGAGTCTGTTAGTAATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGCTCTGTTGCTCCTGTGTTAATCAAGGAGTTGAAGCCAAAACTGTTGACGCTCCTTCCATGCATCTTCAAATGTGTTCAGCATTCTCATGTTGCTGTTAGATTAGCTGCTTCACGCTGCATCACTTCCCTGGCGCAGTCAATGACTGTGAAAGTTATGGGAGCTGTGATTGAAAAGGCTATCCCTATGTTGGAAGATTCGTCATCTGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTAGTTCAGGGGCTGGGTGTAGAGTTGGTACCTTATGCTCCTCTGTTGGTGGTTCCTCTTCTAAGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCCGCTCTTGTTCCTTTACTTCCTTTGGCTCGGGGCCTTCCTCAACCTATTGGACTAGGGGAAGGTGTATCCAGAAATGCAGAAGACTTGCAGTTTTTAGAGCAACTGCTTGACAATTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGGAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGATTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAACTGAGCATCGGACTACAATTGGGAACGAGGATCTTCTGGCATCTTTAATTATCTGCCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATATCCAGTCTTCAATATGTTGGTTCTGCTCAGGAAAGAATGCTTCTTCGAGATCATTTTTGTAAGCATAATGTCATTATAACATCATATGATGTTGTACGTAAAGATGTTGATTTTCTGGGACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGGCACATAATAAAAAATGCCAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAGCACCGCTTGATATTGAGTGGGACACCTATACAGAATAATATAATGGACTTGTGGTCCCTCTTTGATTTTCTGATGCCAGGCTTTCTTGGAACCGAGAGACAGTTCCAAGCAGCATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGTACTTGCCATGGAGGCATTGCATAAGCAGGTGATGCCTTTCCTCCTTCGTAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATCCAAGACAGATACTGTGATTTGAGCCCTGTACAATATAAACTTTACGAACAGTTTTCTGGTTCCCGTGTAAAACAAGAAATGTCATCTATTGTAACAACAACAAATGAGTCTGCTGCACCAGAAGGAAGTGGCACTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATATTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCACTGGTGAGAAGATTCCAGATTCACTCTCTTCCATCCTCTTAGAACTGTTTCCTGCTGGCTCTGATGTTGTTTCAGAACTTCACAAACTCCATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTAGAAGAATGTGGAATTGGAGTTGATAATTCAGGTTCTGAGGGTGCAGTTAACGTTGGGCAGCATAGGGTCTTGATATTCGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGACTTGTTTCAGACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGGTCAGTTGCATCAGAAAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGTCTTACTGCTTACAACACATGTTGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTCTTTGTGGAGCATGACTGGAATCCAATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGACTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGATTCAAAGTGTCCGTGGCTAATGCTGTCATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGACTTGTTTGCATCAGCAGAAACCTCCAAAAAGGGTGTTAATGCTGTGAAGAGTTCGGAGAACAATTCTGATGGAGACGCTAAATTAGTAGGAAGTGGGAAGAGATTGAAATCGATACTTGGCGGATTGGAGGAGCTATGGGACCAATCACAGTATGCAGAGGAGTACAATATGAGTCAATTTTTAGCGAGGCTTATTGGCTAA 6141 0.4172 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHTSLTELFASVVSQMSENGISCSIEDLCAWPYLQSKLTGSAFRSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQSLRRRLGLDVCEQFMDISDVIRDEDLMVSKSDSHLNGIDGRVFTSCSAHNIQKMVVNMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGGTEASGAQSLTSKGTCPDSLNYSKVFMDVNHDDDGFEHDGDGQWPFHTFVEQLIIDMFDSVWEIRHGSVMALREILAHQGASAGVFKPDSHMGGTLFIELEDKSMPSTLKREREIDLNMHVSADEFDSNLKRPKLEDVSSSTFMDSVMTCNNEGDIEISITSETHGCNLTLDYGNGQFNGNSNDMDMESHSDGSHDACKESASIAEQKIHFDDNKMPPGNLIALRNLPQNCELMNSVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLGMQCRPEWEIRHGSLLGIKYLVAVRQEMLADLLGRVLPACKSGLEDPDDDVRAVAADALIPAASAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMVPNMYEVFRLGDKEMENGGGGCGDDDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSMEDLEMAASSYGASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENECGVEFSLDSMKGTIPHDRNGDVPMNSVKMVVGADVDTSVTHTRVVTATALGYFASKLPASSLKYVIDPLWSSLTSLSGVQRQVASMVLISWFKEIKIRNLSKNLDGIPGALKGWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVVKSSGMFDELLTATQIELDCLSVDDAIGFASKIPALCNDSSSNESLAKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARKPCPNDKLIKNICSLTCMDPSETPQAKSLCTIENIDDQGLLSFKTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPVPVIEEKQATVSIESVSNPQTLINNIQVVRSVAPVLIKELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSLAQSMTVKVMGAVIEKAIPMLEDSSSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDITEHRTTIGNEDLLASLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERMLLRDHFCKHNVIITSYDVVRKDVDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQAAYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRVKQEMSSIVTTTNESAAPEGSGTSTKASSHVFQALQYLLKLCSHPLLVTGEKIPDSLSSILLELFPAGSDVVSELHKLHHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVASEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGVNAVKSSENNSDGDAKLVGSGKRLKSILGGLEELWDQSQYAEEYNMSQFLARLIG 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00065 2046 Gene3D - 1691 2009 IPR027417 -
Phco9g00065 2046 Gene3D - 1421 1680 IPR038718 -
Phco9g00065 2046 MobiDBLite consensus disorder prediction 251 266 - -
Phco9g00065 2046 FunFam TATA-binding protein-associated factor BTAF1 508 688 - -
Phco9g00065 2046 MobiDBLite consensus disorder prediction 245 266 - -
Phco9g00065 2046 Pfam Domain of unknown function (DUF3535) 783 1237 IPR022707 -
Phco9g00065 2046 FunFam TATA-binding protein-associated factor BTAF1 1201 1407 - -
Phco9g00065 2046 SMART ultradead3 1445 1641 IPR014001 -
Phco9g00065 2046 SUPERFAMILY ARM repeat 6 1488 IPR016024 -
Phco9g00065 2046 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1419 1680 - -
Phco9g00065 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1432 1681 IPR027417 -
Phco9g00065 2046 FunFam TATA-binding protein-associated factor 172 1691 2009 - -
Phco9g00065 2046 CDD SF2_C_SNF 1797 1939 - -
Phco9g00065 2046 Gene3D - 501 676 IPR011989 -
Phco9g00065 2046 Gene3D - 4 94 IPR011989 -
Phco9g00065 2046 Gene3D - 1199 1405 IPR011989 -
Phco9g00065 2046 Pfam SNF2-related domain 1467 1764 IPR000330 GO:0005524|GO:0140658
Phco9g00065 2046 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2044 IPR044972 GO:0003677|GO:0016887|GO:0017025
Phco9g00065 2046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1818 1974 IPR001650 -
Phco9g00065 2046 Pfam Helicase conserved C-terminal domain 1826 1928 IPR001650 -
Phco9g00065 2046 SMART helicmild6 1842 1928 IPR001650 -
Phco9g00065 2046 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Phco9g00065 2046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1461 1631 IPR014001 -
Phco9g00065 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1682 1984 IPR027417 -
Phco9g00065 2046 CDD DEXHc_Mot1 1449 1681 IPR044078 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00065 Phco-Chr9 439961 460286 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco9g00065 DUF3535 1.4e-103 No_clan