Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00057 ATGGCCCAAGAACCCCAAAATCCACCTCCTCCTCCTCAACAAGTTCCGCCCCTCATCGACCCTGTTCCTGTCGACAACCCGCCCACCACCCAATCTCAACCTCAACCTCAAGCCCAATCACCCTCCATCGAAGCTCAAGCTGAAACTGAAACCCAGGAAAAGGCTCAGCCCGGTGTTGAAGACAAGATTTCTGAATCGGTTTCGTTCAAGGAGGAGACCAATGTCGTCGGCGACCTCCCCGAGGCCCAGAAGAAAGCCCTTGAGGACCTCAAGAAGCTTGTTCAAGAGGCGCTTAACAACCGCTACCTAACTGCTCCCAAGCCCCCCTCACCGGAACCAGAGAAGAAGAAACCAGACATCGTCAAGGAGCCGGAAGTGGCTGCTGGAGAGGCCGCAGAAGAAGCGGAGAAGAAGGCACCGGAAGTGTCAGAAGAAGAGAAGAAGGATGTTGAAGCGAAGGAAGAGACGACGGAAATAGAAGTGACAGAAGAGAAGAAGGATGTTGAAGTGAAAGAAGAGACGAAGGAAGTAGAAGTGACGGAAGAGAAGAAGGAAGTAGAAGTGACAGAAGAGAAGAAGGATGTTGAAGTTAAAGAAGAGAAGAAGGAAGTGGAAGTGACAGAAGAGAAGAAGGATGTTGAAGTGATAGAAGAGAAGAAGGATGTTGAAGTGACAGAAGAGAAGAAGGATGTTGAAGTTAAAGAAGAGAAGAAGGAAGAAGAGGTGACAGAAGAGACGACAGTGGTAGAAGAGGAAGTTGGTCCGGAGGAAGTGGAGATATGGGGAATTCCGCTGCTGGCGGATGAGAGGAGCGATGTGATTCTGCTAAAGTTTCTGAGAGCGAGGGATTTCAAGGTGAAGGATGCCTTCAGCATGCTGAAGAACACCGTGCGTTGGCGGAAGGAATTCGGAATAGACGGTCTGGTGCTGGAAGATTTTGGAAGTGATTGGGACAAGGTGGTGTTCACCGATGGACAGGACAAAGAAGGACACCCGGTGTGCTACAACGTGTTTGGTGAGTTCGAGAGTAAGGAGTTGTACAACAAGACCTTTTCGGACGAGGAGAAGCGCAACAAGTTCATAAGGTGGAGGATTCAGGTGCTGGAGAAGAGCGTGAGAAGCCTTGACTTCTCTCCCACTGCCATCTCCACCATTGTTCAGGTCAACGACCTTAAGAACTCTCCGGGACTCGGCAAGAGGGAACTCAGGCAGGCCACCAATCAGGCCCTTCTTTTGCTTCAGGATAACTACCCTGAGTTTGTGGCCAAGCAGATATTTATCAATGTTCCCTGGTGGTACCTTGCCTTTTATAGGATGATCAGTCCCTTCTTCACACAGAGGACCAAGAGCAAGTTTGTGTTTGCTGGGCCATCCAAGTCTGCCGAAACCCTTTTCAAATATATTGCTCCGGAGCTGGTGCCGCTTCAATACGGTGGACTCAGCAGAGAGGGTGAACAGGAATTCACCACTGCTGATCCTGTTACGGAGGTCACAATCAAACCTGCAACCAAACATGCTGTCGAGTTCCCAGTTTCTGAGAAAGGCCATCTAGTTTGGGAAATCCGAGTGGTGGGTTGGGATGTGAGCTATGTAGCTGAATTTGTGCCCAGCACTGAGGATGGATACACTGTCATTGTGCAGAAGAACAGGAAAATTGCTCCCGCAGATGAGACCGTAATCAGCAACGCTTTCAAAATTGGGGAAGCTGGCAAGGTAGTACTCACCATAGACAACCAAACATCCAAGAAGAAGAAACTCCTCTACAGGTCAAAGACCAAACCCATCGCAGAGTGA 1794 0.4961 MAQEPQNPPPPPQQVPPLIDPVPVDNPPTTQSQPQPQAQSPSIEAQAETETQEKAQPGVEDKISESVSFKEETNVVGDLPEAQKKALEDLKKLVQEALNNRYLTAPKPPSPEPEKKKPDIVKEPEVAAGEAAEEAEKKAPEVSEEEKKDVEAKEETTEIEVTEEKKDVEVKEETKEVEVTEEKKEVEVTEEKKDVEVKEEKKEVEVTEEKKDVEVIEEKKDVEVTEEKKDVEVKEEKKEEEVTEETTVVEEEVGPEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFSMLKNTVRWRKEFGIDGLVLEDFGSDWDKVVFTDGQDKEGHPVCYNVFGEFESKELYNKTFSDEEKRNKFIRWRIQVLEKSVRSLDFSPTAISTIVQVNDLKNSPGLGKRELRQATNQALLLLQDNYPEFVAKQIFINVPWWYLAFYRMISPFFTQRTKSKFVFAGPSKSAETLFKYIAPELVPLQYGGLSREGEQEFTTADPVTEVTIKPATKHAVEFPVSEKGHLVWEIRVVGWDVSYVAEFVPSTEDGYTVIVQKNRKIAPADETVISNAFKIGEAGKVVLTIDNQTSKKKKLLYRSKTKPIAE 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00057 597 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 325 485 IPR001251 -
Phco9g00057 597 MobiDBLite consensus disorder prediction 1 81 - -
Phco9g00057 597 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 494 589 IPR036598 -
Phco9g00057 597 Gene3D - 223 507 IPR036865 -
Phco9g00057 597 SUPERFAMILY CRAL/TRIO N-terminal domain 68 312 IPR036273 -
Phco9g00057 597 ProSiteProfiles GOLD domain profile. 461 592 IPR009038 -
Phco9g00057 597 MobiDBLite consensus disorder prediction 54 68 - -
Phco9g00057 597 Pfam CRAL/TRIO domain 319 479 IPR001251 -
Phco9g00057 597 MobiDBLite consensus disorder prediction 31 53 - -
Phco9g00057 597 Coils Coil 190 219 - -
Phco9g00057 597 MobiDBLite consensus disorder prediction 101 197 - -
Phco9g00057 597 MobiDBLite consensus disorder prediction 110 197 - -
Phco9g00057 597 SMART CRAL_TRIO_N_2 271 296 IPR011074 -
Phco9g00057 597 PANTHER PATELLIN-1 169 594 IPR044834 GO:0008289
Phco9g00057 597 SMART sec14_4 314 482 IPR001251 -
Phco9g00057 597 PRINTS Cellular retinaldehyde-binding protein signature 437 456 - -
Phco9g00057 597 PRINTS Cellular retinaldehyde-binding protein signature 274 296 - -
Phco9g00057 597 MobiDBLite consensus disorder prediction 1 30 - -
Phco9g00057 597 SUPERFAMILY CRAL/TRIO domain 321 481 IPR036865 -
Phco9g00057 597 CDD SEC14 316 480 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00057 Phco-Chr9 398149 400213 Dispersed/Proximal