Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00055 ATGCAACCCAATTCCGCCGCCAGACTTCCCAGCTTTCGCTCAACTCCGGCCTCCTGGTTAGAATCAGTCCTTTTGAAGGAAGAGGAAGAGGAGGAGGAAGACCAAGAAGAAAGCGAAGAAGCTGAAAAGGAGACCTTGACCTTTACCCAGCTGCTTTCTACCATCGCAACTCCCTCTCCTTCCCGACGCCCACGCCAACGCCAACACCAAAACTATGAAATACAGGATTACCCTCCCACCTCCATGCCCATGCCCATCCCCAATCCAATCGCACCCAAGGAACCTGATGCTACTCCCCCCCACATCAAAATGGACATGTTCATGTTTGAGGACCCGGCGGCACCCTGTAGAGTTCGCGCAAAGCGTGGCTGTGCTACGCATCCCAGGAGTATAGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTTCCAAACATGGATAAGCAAACAAACACTGCAGATATGTTACATGAGGCGGTAGCTTATGTAAAGTTTCTACAAAAGCAAATTGAGAGCACCAACGGAGGTGTAAATGTATGGTTCAAGAGTAAAATGCTGACTGTACATGCAGTGGTTGGCCGTTGA 609 0.5025 MQPNSAARLPSFRSTPASWLESVLLKEEEEEEEDQEESEEAEKETLTFTQLLSTIATPSPSRRPRQRQHQNYEIQDYPPTSMPMPIPNPIAPKEPDATPPHIKMDMFMFEDPAAPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLHEAVAYVKFLQKQIESTNGGVNVWFKSKMLTVHAVVGR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00055 202 MobiDBLite consensus disorder prediction 1 69 - -
Phco9g00055 202 CDD bHLH_AtbHLH_like 129 180 IPR045239 -
Phco9g00055 202 Pfam Helix-loop-helix DNA-binding domain 129 175 IPR011598 GO:0046983
Phco9g00055 202 SMART finulus 130 180 IPR011598 GO:0046983
Phco9g00055 202 MobiDBLite consensus disorder prediction 25 41 - -
Phco9g00055 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 174 IPR011598 GO:0046983
Phco9g00055 202 MobiDBLite consensus disorder prediction 1 18 - -
Phco9g00055 202 Coils Coil 22 46 - -
Phco9g00055 202 MobiDBLite consensus disorder prediction 45 69 - -
Phco9g00055 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 181 IPR036638 GO:0046983
Phco9g00055 202 Gene3D - 125 190 IPR036638 GO:0046983
Phco9g00055 202 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00055 Phco-Chr9 388027 390153 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco9g00055 HLH 1.8e-09 No_clan