Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00052 ATGGATCAATCCTTGAAAGTTCTGATCTCTGTGATTGTGATGCAAGATGATGCATCTGATGTCTTTAAATTGGGAGCGCTGAAGAGAGAAGGGTTGTTTTTGTTTAGGGCAGAGGAGAGAGAAGAGAAGGGAGAGGAGATGGAGGACATTGAAGATTTGCTGGTCGGAAGCAGAAGCGCAACTCCGCCGGGCTTCCGTTTGCCATTGGCGGCAGCTGTGGGCGTTGGTGTTGGCGTTGGGAGCAAGCGGAATAAAATCTCTTCTACGCCTTCTCCTGCAATTCCCGGCACTCAGACTATCTACATAAAGACCTTTGGCTGCTCTCACAACCAGAGTGACAGTGAATATATGGCTGGCCAGCTTTCGGCTTTTGGCTATTCGTTGAGTGACAATCCAGACCAAGCAGATCTCTGGCTCATTAACACTTGCACAGTGAAATCCCCCAGTCAATCTGCCATGGATACCATCATAACAAAAGGAAAATCTTCTAATAAACCGCTAGTTGTTGCTGGCTGTGTCCCTCAAGGAAGTCGGTATTTGAAAGAGCTGGAAGGGATCAGCATAGTTGGAGTCCAGCAAATTGATCGTGTTGTTGAAATTGTAGAGGAGACTTTAAAAGGTCACGAAGTGCGCCTTTTGACCCGTAAGAAATTGCCAGCACTTGACCTTCCAAAGGTAAGGAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCCTGCACTTATTGCAAGACAAAGCATGCTCGGGGTCACCTAGGAAGTTACACAATTGATAGCCTTGTTGGGCGTGTAAAATCTGTCATTTCTGATGGAGTTAAAGAGATATGGCTTAGCAGTGAGGACACTGGAGCATACGGTCGTGACATTGGTGTCAATCTTCCAACTTTGTTGAAGGCCTTAGTGGCAGAACTACCTGCTGATGCAAGCACAATGCTACGTATTGGAATGACCAATCCACCTTATATCCTTGAACACTTGAAAGAGATAGCCGAGATTTTGCGGCATCCCTGTGTGTACTCTTTTCTCCATGTACCAGTTCAGTCTGGAAGTGATACTGTCTTGAGTGCAATGAATAGGGAATATACTGTGAGTGAGTTCAGGACTGTTGTAGATACTCTAACTGAGCTTGTGCCAGAGATGCAGATTGCCACTGACATAATATGTGGATTTCCTGGTGAAACTGATGAAGATTTTGTGCAGACTGTCAATCTTGTTAAAGATTATAAGTTCCCTCAAGTTCACATTTCACAATTTTATCCTCGACCAGGTACACCTGCTGCAAGGATGAAAAAGGTTCCAAGTAATGTGGTTAAGGGAAGAAGCCGAGAACTCACAAATGTCTTTGAATCCTTCACACCATACTCTGGGATGGAAGGCAAAGTGGAAAGAATTTGGATTACTGACGTTGCTTCTGATGGAATTCACTTGGTTGGTCATACGAAAGGATATATACAAGTTCTTGTACTTGCTCCAGACCATATGCTTGGAGCTTCAGCTATGGCTAAGATAACATCTGTGGGAAGGTGGTCTGTCTTTGGGGAAGTAATTGAGACAGTCAACCATGCAAGTGACAATAAAGCTCTAAACAAGTTGGTTCCTGACCGGGACTTGCATTCTCTCTGCGTTAACCCAGCCAAGGCTGGTGGATTCTCAGAAGAGCCAGAATCTTGTGCCTGTGGAAGTGACGTCTGTTGTGGTATCGACAAGAGTGATGTTTCAAGAGGCACTGCAGTGCCACAGAACCAAAGCAATAGAAATTTCTTTGAAAGGATGCTAAGGAAGCGGGAGCATCTGCACAAAAAGGTTGAGAGTGAGCTCGCCTCGGGATCTGTTAAAAAGCAGGAAGGAAAGATGAAGAAGTGGGACTTCGTTGATAAGGTTCTTTTGGGTGGAATATCTATCAGCATCTTAACTATTATTGCTCTAGTAGCAGCTCTTGCTTTAAGAGTAATTTGGTCCCAGTAA 1980 0.4444 MDQSLKVLISVIVMQDDASDVFKLGALKREGLFLFRAEEREEKGEEMEDIEDLLVGSRSATPPGFRLPLAAAVGVGVGVGSKRNKISSTPSPAIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYSLSDNPDQADLWLINTCTVKSPSQSAMDTIITKGKSSNKPLVVAGCVPQGSRYLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKKLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISDGVKEIWLSSEDTGAYGRDIGVNLPTLLKALVAELPADASTMLRIGMTNPPYILEHLKEIAEILRHPCVYSFLHVPVQSGSDTVLSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGETDEDFVQTVNLVKDYKFPQVHISQFYPRPGTPAARMKKVPSNVVKGRSRELTNVFESFTPYSGMEGKVERIWITDVASDGIHLVGHTKGYIQVLVLAPDHMLGASAMAKITSVGRWSVFGEVIETVNHASDNKALNKLVPDRDLHSLCVNPAKAGGFSEEPESCACGSDVCCGIDKSDVSRGTAVPQNQSNRNFFERMLRKREHLHKKVESELASGSVKKQEGKMKKWDFVDKVLLGGISISILTIIALVAALALRVIWSQ 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00052 659 Gene3D - 99 219 IPR038135 -
Phco9g00052 659 PANTHER RADICAL SAM PROTEINS 47 654 - -
Phco9g00052 659 ProSiteProfiles TRAM domain profile. 460 522 IPR002792 -
Phco9g00052 659 ProSitePatterns Methylthiotransferase radical SAM domain signature. 235 255 IPR020612 GO:0051539
Phco9g00052 659 SFLD Radical SAM 198 440 IPR007197 GO:0003824|GO:0051536
Phco9g00052 659 SMART MiaB 231 451 IPR006638 GO:0003824|GO:0051536
Phco9g00052 659 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase 99 218 - -
Phco9g00052 659 Pfam Uncharacterized protein family UPF0004 100 177 IPR013848 GO:0035596|GO:0051539
Phco9g00052 659 SUPERFAMILY Radical SAM enzymes 220 455 - -
Phco9g00052 659 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 99 516 IPR005839 GO:0006400|GO:0016740|GO:0051539
Phco9g00052 659 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 98 206 IPR013848 GO:0035596|GO:0051539
Phco9g00052 659 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase isoform X2 231 461 - -
Phco9g00052 659 NCBIfam tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 100 521 IPR006466 GO:0035598|GO:0035600
Phco9g00052 659 CDD Radical_SAM 235 439 - -
Phco9g00052 659 SFLD B12-binding domain containing 198 440 - -
Phco9g00052 659 Pfam Radical SAM superfamily 238 410 IPR007197 GO:0003824|GO:0051536
Phco9g00052 659 Gene3D tm_1862 like domain 229 459 IPR023404 -
Phco9g00052 659 ProSiteProfiles Radical SAM core domain profile. 227 460 IPR007197 GO:0003824|GO:0051536