Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00051 ATGAGTATGGAGCTTCCCTGTGACAGTGAGGGCGTCTGCATGCAGTGCAAGGCCGTGCCTGGAGAGGAAGAGAGGCTGCTATGCATCACCTGCAACACTCCTTGGCACCTCTCATGCATCTCCTCTCCTCCATCCACTCTTGAAGCCACCACTCACTGGTCCTGTCCCGACTGCTCCAATCTCGATCCTCATCCATCCCTTCCCGCTCCCCTTCGCAATGACCTCGTCTCCGCAATGCTCACCATCGAGAATGACGATTCTCTTACGCAAACTCAGAAAGCCAAGAAACGCCAACAACTCATTGCTGGAAAAGCTCCTGCACAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGAGAATCAGAGTAAACCACCATCTGTTTGGGAAATGCTCTCGAGAACTATCCAATGCTCCATCTGCCTCAACTTACCGGAGAGGCCCGTCACGACTCCTTGTGGTCACAGTTTCTGTCTGAAGTGTTTTGAGAGATGGGTTCGGCAAGGGAAGAGGAACTGTGCCCATTGCCGCCAGATTATTCCGGCAAAGTTTGCAAGCCAGCCCCGTATCAATTCTGCATTGGTGTTTGCAATTCGCATGGCCAGGACCAATTCTAACCCTAATGCTAGTGCTGGAGGGGATAGGACTCTCAACCATTACCGGCACAATCAAGACAGACCCGATGAGCCTTTTACTACGGAACGTGCCCAGAGGGCTGGCCGTGCCAATGCGGCCAGCGGAAAAATATTTGTGACAGTGCCTACGGATCATTTTGGTCCAATCACTGCAGAGCATGACCCTGTGAGGAATCAGGGTCTGCTGGTGGGTGAAAGTTGGAGAGACAGGCTGGAATGCAGGCAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATTGCTGGTCAATCAGATCGAGGTGCACAATCTGTTGTCCTTTCTGGTGGTTACGTGGATGATGAAGATCATGGAGAGTGGTTTCTCTACACTGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGCAGTTTGAAAAGTACAACCTTGCACTTCAAGTTAGCTGTCTCAAGGGTTATCCGGTTCGAGTTGTCAGATCTCACAAAGAAAAGCGATCTTCATATGCCCCGGAGACTGGAGTGCGCTACGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCAGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGGTGTGACAATGAACCCGCCCCCTGGACAAGTGATGATCGTGGAGATAGGCCCAGACCCTTGCCGGTCATCCGTGAACTGAAAAAGGCCACCGTCACATTTGAAAGAACTGAATCTCCATCTTGGGATTTTGATGAAGAAGATTCTCATTGGAAGTGGAAGAAACCACCGCCTCCCAGCAAACGAAAGGTGCAAAGTGCGGAACCCGTAGAGGGACTAAGGGCATGGTCAAATAGTGATATGAGGAAGTTCGAACTTAAGAAAATCCAGGAAAAATTGCACATAGGGTTCTCGTGCATGATATGCAAGGAGGTTATGGTTTCACCAGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTAAATTTGCTGGTCAGTCTTTTGTGAAGGAGAGAAGTGGGGGCGGGAGAACGCTTCGGTCCCAAAAAAATGTGATGCAATGTCCTTCTTGCCCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGATGTAGATTTGAAGGGTGCGATTGAGTCATTGAAAGCCAATGTTGAAAACATTGTAAAATCACTCGAGGCAGATAAAGATGCAGCAGCAGATGAATTGTATGATCATACATGTTCAGAGAACCAAAATTCTGCAGAAGAGTTGAACGATCTACCTCAAGGATCTGATGCTGGTGAGCTTAAAGACACCAATAATGAGGGGTCAGATCCAGAAGTAACGTGCAATGAAAAGAGAAAGAAAGGTGATGATGAAACACAATCGCCTGATGATAAAATGGATAAAAAAGATAAAAAATACAAAATGACTGAGCAAGCAATGGATGATAAAAATAATTCTTCATCATCAAGTTCTCTCAATCTTCCATAA 2118 0.4698 MSMELPCDSEGVCMQCKAVPGEEERLLCITCNTPWHLSCISSPPSTLEATTHWSCPDCSNLDPHPSLPAPLRNDLVSAMLTIENDDSLTQTQKAKKRQQLIAGKAPAQDEEEEEEEEEKEENQSKPPSVWEMLSRTIQCSICLNLPERPVTTPCGHSFCLKCFERWVRQGKRNCAHCRQIIPAKFASQPRINSALVFAIRMARTNSNPNASAGGDRTLNHYRHNQDRPDEPFTTERAQRAGRANAASGKIFVTVPTDHFGPITAEHDPVRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQQFEKYNLALQVSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDRGDRPRPLPVIRELKKATVTFERTESPSWDFDEEDSHWKWKKPPPPSKRKVQSAEPVEGLRAWSNSDMRKFELKKIQEKLHIGFSCMICKEVMVSPVTTPCAHNFCKSCLEGKFAGQSFVKERSGGGRTLRSQKNVMQCPSCPIDISDYLQNIQVDVDLKGAIESLKANVENIVKSLEADKDAAADELYDHTCSENQNSAEELNDLPQGSDAGELKDTNNEGSDPEVTCNEKRKKGDDETQSPDDKMDKKDKKYKMTEQAMDDKNNSSSSSSLNLP 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00051 705 MobiDBLite consensus disorder prediction 626 705 - -
Phco9g00051 705 Pfam Zinc finger, C3HC4 type (RING finger) 139 177 IPR018957 GO:0046872
Phco9g00051 705 Coils Coil 596 616 - -
Phco9g00051 705 SMART ring_2 13 58 IPR001841 -
Phco9g00051 705 SMART ring_2 515 571 IPR001841 -
Phco9g00051 705 SMART ring_2 139 177 IPR001841 -
Phco9g00051 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 60 IPR013083 -
Phco9g00051 705 MobiDBLite consensus disorder prediction 207 244 - -
Phco9g00051 705 ProSiteProfiles Zinc finger RING-type profile. 515 571 IPR001841 -
Phco9g00051 705 MobiDBLite consensus disorder prediction 457 484 - -
Phco9g00051 705 MobiDBLite consensus disorder prediction 646 689 - -
Phco9g00051 705 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 240 435 - -
Phco9g00051 705 FunFam Predicted protein 91 204 - -
Phco9g00051 705 SUPERFAMILY FYVE/PHD zinc finger 4 65 IPR011011 -
Phco9g00051 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 204 IPR013083 -
Phco9g00051 705 CDD RING-HC_ORTHRUS_rpt1 137 182 IPR047498 -
Phco9g00051 705 MobiDBLite consensus disorder prediction 457 471 - -
Phco9g00051 705 ProSitePatterns Zinc finger PHD-type signature. 13 58 IPR019786 -
Phco9g00051 705 MobiDBLite consensus disorder prediction 219 236 - -
Phco9g00051 705 Gene3D - 240 437 IPR036987 -
Phco9g00051 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 617 IPR013083 -
Phco9g00051 705 Pfam RING-type zinc-finger 515 569 IPR027370 -
Phco9g00051 705 SUPERFAMILY RING/U-box 138 189 - -
Phco9g00051 705 ProSitePatterns Zinc finger RING-type signature. 530 539 IPR017907 -
Phco9g00051 705 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 605 IPR045134 -
Phco9g00051 705 Pfam SAD/SRA domain 272 420 IPR003105 -
Phco9g00051 705 SMART G9a_1 264 421 IPR003105 -
Phco9g00051 705 SUPERFAMILY RING/U-box 510 595 - -
Phco9g00051 705 ProSiteProfiles YDG domain profile. 269 417 IPR003105 -
Phco9g00051 705 SUPERFAMILY PUA domain-like 243 441 IPR015947 -
Phco9g00051 705 ProSiteProfiles Zinc finger RING-type profile. 139 178 IPR001841 -
Phco9g00051 705 MobiDBLite consensus disorder prediction 88 129 - -
Phco9g00051 705 MobiDBLite consensus disorder prediction 690 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00051 Phco-Chr9 354397 357915 Dispersed