Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00022 ATGGAAGCGTCTCCGCCACCACGCACCATCCTCGGCAGGTACCAGCTCACGCGCTTCCTTGGCCGCGGCAACTTCGCCAAAGTGTACCAGGCACGCTCCCTCGTAGACGGCGCCACGCTGGCCGTCAAGGCCATCGACAAGTCCAAAACAGTCGACGCAGCCATGGAGCCCCGCATCGTGCGCGAGATCGACGCCATGCGCCGCCTCCAGAACCACCCAAACATCCTCAAAATCCACGAGGTCCTTGCCACAAAGACCAAAATCTACCTCGTCGTCGACTACGCCGGCGGCGGCGAGCTCTTCTCCAAGCTCTCCCTGCGCGGCCGCCTCCCGGAGCCCCTGGTGCGGCGCTACTTCTCCCAGCTCGTCTCTGCGCTCCTCTTCTGCCACCGACACGGCATCGCGCACCGTGACCTCAAGCCGCAGAACCTCCTCCTAGACGCCGCCGGCGACCTTAAGGTTTCCGACTTCGGCCTCTCCGCGCTCCCGGAGCACCTCCGCGATGACCTCCTCCACACCGCCTGCGGCACGCCGGCCTTCACTGCGCCGGAGATCCTACGCCGCGTCGGCTACGACGGCTCCAAGGCCGACGCTTGGTCCTGCGGTGTCATTCTCTACAACCTTCTTGCCGGCCACCTCCCCTTTGACGACTCGAACATTCCGGCCATGTGCCGGCGAATCTCCCGCCGCGACTACCAGTTCCCGGAGTGGATATCGAAATCTGCGCGCAGCCTCATCCACCAATTGCTGGACCCTAACCCTAAATCGCGAATTTCGCTGGAAAGAGTTTTCGATAGCAGATGGTTGAGGAATAAGAAAGCGGTTTGGTGTAACGTGTTGGAGGAGAGTGTATTGGAGTCTGATTTGTATAACAAGTGCTGCGACGGTTACAAATTGGGGATGAACGCATTTGACATAATATCGATGTCGTCGGGGTTGGACTTGCGAGGACTGTTCGAAACGACGTCGGAGAAGGGGAGGCGGAGGGAGAAGAGGTTCAGTTCGGAGAAGAGTGTGGGAACGGTGGAGGCGAAGGTTAAGGAGGTTGGGGAGAGGTTAGGGTTTCGGATTGAGGTTGGGAAGAACGGTGCAATTGGGTTGGGAAAGGGGAAGGTTGGTTTGGTGGTTGAGGTGTTTGAGATTGTGTCTGACTTGCTCCTTGTCTCTGTTAAAGTGGTTGATGGTGGCGTTGACTTTGACCTTCTTCATTGGGATGATTGGAGACATGGCCTTCAAGATCTTGTTCTCTCATGGCATCACAGTGAATGA 1269 0.5808 MEASPPPRTILGRYQLTRFLGRGNFAKVYQARSLVDGATLAVKAIDKSKTVDAAMEPRIVREIDAMRRLQNHPNILKIHEVLATKTKIYLVVDYAGGGELFSKLSLRGRLPEPLVRRYFSQLVSALLFCHRHGIAHRDLKPQNLLLDAAGDLKVSDFGLSALPEHLRDDLLHTACGTPAFTAPEILRRVGYDGSKADAWSCGVILYNLLAGHLPFDDSNIPAMCRRISRRDYQFPEWISKSARSLIHQLLDPNPKSRISLERVFDSRWLRNKKAVWCNVLEESVLESDLYNKCCDGYKLGMNAFDIISMSSGLDLRGLFETTSEKGRRREKRFSSEKSVGTVEAKVKEVGERLGFRIEVGKNGAIGLGKGKVGLVVEVFEIVSDLLLVSVKVVDGGVDFDLLHWDDWRHGLQDLVLSWHHSE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00022 422 Gene3D Transferase(Phosphotransferase) domain 1 7 303 - -
Phco9g00022 422 FunFam Non-specific serine/threonine protein kinase 7 99 - -
Phco9g00022 422 CDD CIPK_C 302 408 - -
Phco9g00022 422 SUPERFAMILY Protein kinase-like (PK-like) 10 277 IPR011009 -
Phco9g00022 422 Pfam NAF domain 301 358 IPR004041 GO:0007165
Phco9g00022 422 FunFam Non-specific serine/threonine protein kinase 5 295 - -
Phco9g00022 422 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Phco9g00022 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Phco9g00022 422 SMART serkin_6 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00022 422 Pfam Protein kinase domain 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00022 422 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Phco9g00022 422 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 361 - -
Phco9g00022 422 Gene3D Kinase associated domain 1, KA1 304 416 - -
Phco9g00022 422 ProSiteProfiles Protein kinase domain profile. 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00022 Phco-Chr9 177576 178844 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco9g00022 Pkinase 4.6e-66 CL0016