Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00015 ATGAACCCCAAAACAAAATCAACCGCCAGCACAAACAAGATGGCACCCCTCAAACTGCATCACTTCCTCCTTCTCATATTCATCTTCTTCTTCTTGCTCCCTTCTTCCCACGCCCAAACGCCACGTCAGGAGAACAACACGGGCTTCACGTGCACGGGCACCCGCTCCTGCGCCGCCTACGCCTTCTACCGCGCCTCCGCTCCCGACTTCCTGGACCTGGCCGCCGTGGCCGACCTCTTCGAGGTGAGCCGCCTCATGATAGCCACGCCGAGCAACATCTCCTCCGTGTCCTCCGCCCTGGTCCAAGACCAGCCCCTCTTCGTCCCCTTGAGCTGCTCCTGCAACTCCGTCAATGCCACCTTCGGGTCCCTCTCCTACGCCAACATCTCCTACGTCATCCAACCCAACGACACCTTCTTCACCGTCTCCACCTTCAAGTTCAACAACCTCACCACCTACCCTTCCGTCCAAACCGTCAACCCCACCTTGGTCGCCACCAACCTCTCCATCGGCCAAGTCACCATCTTCCCTGTCTTCTGCAGATGCCCCGACACCAACAACACCAATTACATGATCTCGTACGTTGTGCAGCCCGAGGACAACTTCTCCTCCATTGCCTCAGCTTTTGGGGTTCAGGAACAAGCTATAATTGACGTCAACAACGACACACTCTATAATTATGACACCATTTTCATCCCGGTGGAGCAGCTTCCGTCTCTGTCGCAGCCTGCGGTGGCTCCAGCTGCGCCGCCTAGTGGGAATGGGAGTGGGAGGGATAGGACGGGGACTGTTAGAGGGTTGGGGATTGGGTTGGGGTTGGTGGGGTTGTTGTTGGTGTTGGTGAGTGGGGTGTGGGTGTGGAGAGAGTTTGTGATGAAGAAGAGGTTGGGAGTGAAGGATGAGGAAGAGGAGGGAGGGAGGAAGAAGGTGTATTCGGGAGGGAAAGAGGGGCAGAAAGTTGGTTTGGATATGAAACTGATGGCAAATGTGTCGGATTGTTTGGACAAGTATAGAGTTTTTGAGGTTGAGGAACTGGTGGAGGCCACTGATGGGTTTGATAGGAGGTCCTTGATCGAGGGATCCGTTTACAGAGGGAAGATTGATGGGGAGCTCTTTGCCATCAAGAAGATGAAGTGGAATGCCTATGAGGAACTCAAGATCTTGCAGAAGGTAAACCATGGGAATCTGGTGAAGTTGGAGGGATTCTGCATAGACCCAGAAGAAGCAAACTGCTATCTAGTCTATGAATATGTGGAGAATGGATCTCTATACTCGTGGTTGCACGAGGAGAAAAAGGAAAAGTTGAACTGGAAAACAAGGCTAAGAATAGCGATTGACATTGCCAATGGCCTCCAATACATCCACGAGCACACGAGGCCACGAGTTGTGCACAAAGACATCAAGAGCAGCAACATTCTCTTGGACTACAACAAGAGAGCAAAAATTGCAAATTTTGGGCTTGCAAAGTCTGGAATGAATGCCATCACCATGCACATTGTGGGAACACAGGGCTACATTGCACCTGAATATCTGGCTGATGGTGTGGTCTCTACAAAGATGGATGTGTTCTCTTTTGGGGTTGTGTTACTTGAACTAATTTCTGGGAAGGAAGCCATCGATAAGGAGGGAAATCTGTTGTGGGCAAGTGCCATCAGAAGATTTGAAGTGGAGAGTGAGCAAGAGAAGGTTAGGAGACTGAGGGAATGGTTGGATAAGGATATTTTAAGGGAGACTTGCTCAATGGAAAGTTTGATGGGTGTTCTCACAGTTGCAATTGCTTGCTTGCAAAAAGAGCAGTCAAAGAGGCCCAGCATAATGGACATTGTCTATGCACTATGTAAAAGTGAAGATTTGGGCTTTGACATCTCAGATGGTGGGATTGGCTCACCACGGGTGGTGGCTAGGTAG 1908 0.5084 MNPKTKSTASTNKMAPLKLHHFLLLIFIFFFLLPSSHAQTPRQENNTGFTCTGTRSCAAYAFYRASAPDFLDLAAVADLFEVSRLMIATPSNISSVSSALVQDQPLFVPLSCSCNSVNATFGSLSYANISYVIQPNDTFFTVSTFKFNNLTTYPSVQTVNPTLVATNLSIGQVTIFPVFCRCPDTNNTNYMISYVVQPEDNFSSIASAFGVQEQAIIDVNNDTLYNYDTIFIPVEQLPSLSQPAVAPAAPPSGNGSGRDRTGTVRGLGIGLGLVGLLLVLVSGVWVWREFVMKKRLGVKDEEEEGGRKKVYSGGKEGQKVGLDMKLMANVSDCLDKYRVFEVEELVEATDGFDRRSLIEGSVYRGKIDGELFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEANCYLVYEYVENGSLYSWLHEEKKEKLNWKTRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDYNKRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGKEAIDKEGNLLWASAIRRFEVESEQEKVRRLREWLDKDILRETCSMESLMGVLTVAIACLQKEQSKRPSIMDIVYALCKSEDLGFDISDGGIGSPRVVAR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00015 635 ProSiteProfiles LysM domain profile. 192 238 IPR018392 -
Phco9g00015 635 ProSiteProfiles Protein kinase domain profile. 296 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00015 635 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 26 614 - -
Phco9g00015 635 Gene3D Transferase(Phosphotransferase) domain 1 418 620 - -
Phco9g00015 635 CDD LysM 192 232 IPR018392 -
Phco9g00015 635 FunFam PTI1-like tyrosine-protein kinase 3 418 617 - -
Phco9g00015 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Phco9g00015 635 Pfam LysM domain 194 232 IPR018392 -
Phco9g00015 635 Gene3D Phosphorylase Kinase; domain 1 322 417 - -
Phco9g00015 635 SUPERFAMILY Protein kinase-like (PK-like) 336 612 IPR011009 -
Phco9g00015 635 Pfam Protein kinase domain 361 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00015 635 SMART serkin_6 352 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00015 635 Gene3D LysM domain 181 240 IPR036779 -
Phco9g00015 635 SMART LysM_2 193 233 IPR018392 -
Phco9g00015 635 SMART LysM_2 130 177 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00015 Phco-Chr9 134532 137734 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Phco9g00015 Pkinase 4.2e-42 CL0016