Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03398 ATGGACTCTTCCTACGCTGAAACGTTGAAGACACAGTGTCCTGCACCACCTGCTACCTCAGACCCAACGCTGTCTTTTGATCCTTCAACTCCGCTTCGTTTGGACAGAAAATACTACGAGGGATTGATCAACCACCGTGGCTTGCTAACGTCGGATCAGACGCTGTTCACGACCCAGTCCACAAGGGAAATGGTGGTGAGCAATGCAAACAACGGTGCAAGTTGGTCTGAGAAGTTTGCCAAGGCAATGGTGCAGATGGGTTCCATAGAAGTGCTCACTGGCTCCAGTGGTGAGATCAGGAAGCATTGCAGCTTTTATCCACCATCTCCTGTTTCTGGCTCAATCATTACTCTCTCCTTCATTTCACTTCTAATCGCTTCTCATTCTTCTTTTTTGCTGCTTCTCTCGCGCCGCAACCAAACACGCCCTAATCCAATTCCAACCATCATGTCCAACTCTGACGGACCCACTAACGGCGTCACCACTAACGACGCAAACGCACTCGCCGACTCGCACCAGCGACCCGCCACCACCACCACGCTCGCCGTTAAGAAACCTCCCTCCAAGGACCGTCACAGCAAAGTCGACGGCCGGGGACGGCGTATTCGCATGCCGATCATATGCGCGGCGCGCGTGTTCCAGCTCACGCGTGAGCTCGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATAGCCGCCACCGGCACCGGCACCACGCCGGCCACGTTCTCCACTGTCTCCGATCACAAGCCACTCCTCCCTGCCCCCACACCTTTCCTCCTCGGCAAGCGCATTCGCCCCGACGACACCGACGCCGTTTCCAAGGACGACGCCGTTTCGCTCGTCGCGCCGCCCACGCCGCCCGCGCTCTGGGCGCTCCCGCCGCGCCCTGATTTCAGCCAGGTCTGGAGCTTCGCCGCCGCGGCCGCGGCCGCGGCGCCGCCGGAACTCGTGTCCGTCTCGTCGCAGAACTCCCTGTTCCACCACCACCAACACCAGCACCATCACCAGCAACAACAAGCCGCAATGGGAGAAGCCTCCGCGGCGAGGCTCGGAAATTACCTCCCCGGCCACCTCAATTTGCTCGCCTCGTTGTCCGGAGGCCATGGAAATTCCGGGCGGCGGGACGAGGAGCCTCGTTGA 1170 0.6009 MDSSYAETLKTQCPAPPATSDPTLSFDPSTPLRLDRKYYEGLINHRGLLTSDQTLFTTQSTREMVVSNANNGASWSEKFAKAMVQMGSIEVLTGSSGEIRKHCSFYPPSPVSGSIITLSFISLLIASHSSFLLLLSRRNQTRPNPIPTIMSNSDGPTNGVTTNDANALADSHQRPATTTTLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFSTVSDHKPLLPAPTPFLLGKRIRPDDTDAVSKDDAVSLVAPPTPPALWALPPRPDFSQVWSFAAAAAAAAPPELVSVSSQNSLFHHHQHQHHHQQQQAAMGEASAARLGNYLPGHLNLLASLSGGHGNSGRRDEEPR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03398 389 PRINTS Plant peroxidase signature 25 40 IPR000823 GO:0004601|GO:0006979|GO:0020037
Phco8g03398 389 PRINTS Plant peroxidase signature 81 94 IPR000823 GO:0004601|GO:0006979|GO:0020037
Phco8g03398 389 PRINTS Plant peroxidase signature 41 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Phco8g03398 389 ProSiteProfiles Plant heme peroxidase family profile. 1 107 IPR002016 GO:0004601|GO:0006979|GO:0020037
Phco8g03398 389 SUPERFAMILY Heme-dependent peroxidases 1 105 IPR010255 GO:0004601|GO:0006979|GO:0020037
Phco8g03398 389 ProSiteProfiles TCP domain profile. 188 242 IPR017887 -
Phco8g03398 389 MobiDBLite consensus disorder prediction 1 27 - -
Phco8g03398 389 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 165 321 IPR005333 GO:0003700
Phco8g03398 389 Pfam Peroxidase 1 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Phco8g03398 389 Gene3D - 87 105 - -
Phco8g03398 389 MobiDBLite consensus disorder prediction 335 355 - -
Phco8g03398 389 Pfam TCP family transcription factor 188 259 IPR017887 -
Phco8g03398 389 Gene3D Peroxidase, domain 2 1 86 - -
Phco8g03398 389 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03398 Phco-Chr8 48465809 48467514 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Phco8g03398 TCP 5.2e-30 No_clan