Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03346 ATGTCAAATCCTGTGATTCTAAGCCTTCCAAATGGCAGCAAGAGCAGAGTTTTTTGGCAGAATCAAGATGGTTGTGTTTGGTTTTGCAATGGTTGGAAAGAGTTTAGAAAATACTCAAAGTTGGATGTGCCACATTTGTTAGTGTTTCGATATGAAGGAAATTCTTGCTTTAACGTGATTATTTTTGGAAGTGCTTTAGAAATCGAATACCCTTTAAGCAGGGATGCTACTAAAGAAGAAGTGGAAGAAATTGATAAAGGTAGTGATTTTTCTGTAAAATTTGGTGAAGAGCGAAGGAAGAGGCCAAGAGAAGAAGTACAAGAAGAAGAAGAAGAAAAGCCTAATAAGCAGAAGAAGAAGAGAGCATGTTCTTATTATTCCGATGCAATATATGAATTCAAAAGTAACCCAAGTGAACATTGCAAAGGATATTTCAAGAAGAAACTCATAATGTTTCACAAGAAGATCATGCCAGCAAAATTTGCCAAACCATATCTACACAAGGAAGGAAGTGCTACACTTTTTGTTGGACATGGCAGAACTTGGGAGGTTGAGACAAAGGTTAATTCCCATGAACAATTAGTATTTTCCAGTGGGTGGAGGAAATTTTTGTGGGACAATAAATTGAAACTTGGTGATGTTTGTGCTTTTGAGCTATTAGACAGTGAACCATTTTTATTCAAGGTTACTATATATCCTCTAGAAGAGAACTCAAACACTCTCCTCTTCAAAGGTCGAAAAGGAGTTTCTGATGTGCCTTCTTCATCCCTTAAAACTCATGTGGCCCCTAAAGCAAGGTCATCAAAGCCCAAAGATGATATCTTCATCTTCATCAAGTCAGGAGTGCCGGTAGATGTAAGCATTTTGTTGGGTTGTGCTTTGGTAGGGAGAGAGATATGCCCTTCATTATGCTATGTATTAGGGTTGGTTTACCCCTAA 939 0.3781 MSNPVILSLPNGSKSRVFWQNQDGCVWFCNGWKEFRKYSKLDVPHLLVFRYEGNSCFNVIIFGSALEIEYPLSRDATKEEVEEIDKGSDFSVKFGEERRKRPREEVQEEEEEKPNKQKKKRACSYYSDAIYEFKSNPSEHCKGYFKKKLIMFHKKIMPAKFAKPYLHKEGSATLFVGHGRTWEVETKVNSHEQLVFSSGWRKFLWDNKLKLGDVCAFELLDSEPFLFKVTIYPLEENSNTLLFKGRKGVSDVPSSSLKTHVAPKARSSKPKDDIFIFIKSGVPVDVSILLGCALVGREICPSLCYVLGLVYP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03346 312 CDD B3_DNA 144 233 IPR003340 GO:0003677
Phco8g03346 312 Pfam B3 DNA binding domain 155 231 IPR003340 GO:0003677
Phco8g03346 312 Gene3D - 1 66 IPR015300 -
Phco8g03346 312 PANTHER B3 DOMAIN-CONTAINING 148 233 - -
Phco8g03346 312 ProSiteProfiles B3 DNA-binding domain profile. 156 235 IPR003340 GO:0003677
Phco8g03346 312 MobiDBLite consensus disorder prediction 95 115 - -
Phco8g03346 312 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Phco8g03346 312 Gene3D - 108 236 IPR015300 -
Phco8g03346 312 SUPERFAMILY DNA-binding pseudobarrel domain 4 63 IPR015300 -
Phco8g03346 312 SMART B3_2 145 235 IPR003340 GO:0003677
Phco8g03346 312 SUPERFAMILY DNA-binding pseudobarrel domain 144 232 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03346 Phco-Chr8 48077820 48080079 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco8g03346 B3 2.2e-13 CL0405