Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03345 ATGGCAGATCTGCCAAAGACTGCTATAGCCCCCATCCCCTGTGACAGTGCTGCTATTGCTCGATATAAAAATTTAGACATATGGAGATCTCTGTTACGTTATTCTGGTTTTGTCCAACTCTCCATGGCTAGTATATGTGTGCAGCTGGGTCAACACTTTCATCTTTTGGGGTACTTGTTTGTATATAAAGTTCAAAGCTTGTATAGGTTTTGCAATAGTGAGTGGCAAAGAGAGATGGATCAGATGCACATGGACATTGCTGCTAATGATCTTAAAGTTCCTACCAGTTTTGTGAGTAGACATTGGCAAGGAATGTCAAATCCTGTCATTCTAAGCCTTCCAAATGGCACCGAGAGCAAAGTTTTTTGGCTGAATCAAGATGGTGGTGTTTGGTTTTGCAATGGTTGGAAAGAGTTTGCAAAATACTCCAACATGGATGTGTCACATTCTATAGTGTTTCGATATGAAGGAAATTCTTGCTTCAACGTGATTATTTTTGGAAACAGTGGTTTAGAGATAGAATACCCTTTAAGCAGGGATGCTACTAATGAAGAAGTGAAAGAAATTGATGAAGATAGTTATTTCCCTGCAAAATTTAGTGAGAACGAAGTAAGAGGCCAAGAGAAGAAGTACAAGAAGAAGAAGAAGAAGAAAAACCTAACAGGCATAAGACATGTTCTGATTATTCCAAGCACAAGAACAGTGGTCATGCCAGCGGAATTTGCCAAACCATATCTACACAAGGAAGGAAGTGCTACACTTTTTGTTGAACATGGCAGAACTTGGGAGGTTGAGACAAAGGCTAATTCCCATGGACAATTAGAAGTTTTCGTTGGGTGGAGGGAATTTTTGTTGGATAATAAATTGAAACTTGGTGATATTTGTGCTTTTGAGGTATTAGACAGAGACCTGCTTTTATTCAAGGTTACTATATGTCCTCTAGAATAG 948 0.3903 MADLPKTAIAPIPCDSAAIARYKNLDIWRSLLRYSGFVQLSMASICVQLGQHFHLLGYLFVYKVQSLYRFCNSEWQREMDQMHMDIAANDLKVPTSFVSRHWQGMSNPVILSLPNGTESKVFWLNQDGGVWFCNGWKEFAKYSNMDVSHSIVFRYEGNSCFNVIIFGNSGLEIEYPLSRDATNEEVKEIDEDSYFPAKFSENEVRGQEKKYKKKKKKKNLTGIRHVLIIPSTRTVVMPAEFAKPYLHKEGSATLFVEHGRTWEVETKANSHGQLEVFVGWREFLLDNKLKLGDICAFEVLDRDLLLFKVTICPLE 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03345 315 CDD B3_DNA 231 313 IPR003340 GO:0003677
Phco8g03345 315 Gene3D - 193 314 IPR015300 -
Phco8g03345 315 ProSiteProfiles B3 DNA-binding domain profile. 76 169 IPR003340 GO:0003677
Phco8g03345 315 CDD B3_DNA 91 166 IPR003340 GO:0003677
Phco8g03345 315 Pfam B3 DNA binding domain 232 311 IPR003340 GO:0003677
Phco8g03345 315 Pfam B3 DNA binding domain 87 166 IPR003340 GO:0003677
Phco8g03345 315 SMART B3_2 223 315 IPR003340 GO:0003677
Phco8g03345 315 SMART B3_2 81 169 IPR003340 GO:0003677
Phco8g03345 315 SUPERFAMILY DNA-binding pseudobarrel domain 234 310 IPR015300 -
Phco8g03345 315 Gene3D - 76 170 IPR015300 -
Phco8g03345 315 SUPERFAMILY DNA-binding pseudobarrel domain 85 169 IPR015300 -
Phco8g03345 315 Coils Coil 197 217 - -
Phco8g03345 315 ProSiteProfiles B3 DNA-binding domain profile. 220 315 IPR003340 GO:0003677
Phco8g03345 315 PANTHER B3 DOMAIN-CONTAINING 76 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03345 Phco-Chr8 48068883 48073470 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco8g03345 B3 4.1e-11 CL0405