Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03344 ATGAACTCTCTCTTTTCGCCAGAAAACCTTCCTCCACCGCCGGGAATCCCAATCCCCGCCTCTATCGCTGCCGCCACAGCCACCACCAGCACCTCCCCCGCACCAACACTAATCCCAAAGCTCGAACCTTTCGATGGATGGCTCAACACCCACACTTCCCAACAACAACAACAATCGCAGGACCCCAATTTTTCAAATGGGTCCCTCGACCTCGACCTCAATCTCCTGTGCGACGGAACCTCCGACGACCCAAAGAACAACTTGTTCTCCGAGTTCAACAGAATCTCCCAGCTTTTCTGCACGGCGTTCTCCGCCAACGATCCCCAGAACGATGCCGTTCCCGACCCCATCACCGAAGGCCTGCAACAGCTCCGAAACGACGCCTTTTCCGACCCCTTCGCGGAAAACCCGCAGCACTTCCAAAACGGAGTCGTTTCGGGTTCCGGGCTGCAGCAGACCCCAAAGGGCACCTCTCCGGACCCGGATACGCAGGCAATTGTGCCTGTCCCGGAGGAGGAGCGGTCCTCTTCGATGATGGCCTCAACCACGCCGAGGCGGCGGTGTAAGGAGTTAGTTCGGGTGGCGGATCTAGGCGCGCCGGAGCAGCGACACTTCCGGGACGTTGTCCGGCGGACTAGGAAGGTGTATGACTCGCTGCGCGTGCTGGCGACTGTGGAGGACGAGCGGCGGGTGGACTCCCGCAGGGGGCGCAGCGATTTGCGAGCCTCGGCCGTGATGAGGAGCTGTGGTTTGTGGTTGAATCGTGACAAGAGAATTGTTGGTTCAATTCCTGGTGTTTGCGTTGGTGATGTGTTCCTCTATAGGATGGAGTTGTGCGTGGTTGGGTTACATGGTCATCCTCAGGCTGGCATAGATTATCTTCCTGGCAGCATGAGTTCGAACGGTGAACCAATTGCCACGAGTGTGATTGTCTCTGGCGGTTACGAGGATGATGTTGACGAGGGTGATGTCATCACTTACTCTGGGCATGGTGGCCAGGACAAGCATTCTAGGCAGGTTTGTCATCAGAAGCTTGAGGGAGGGAACCTTGCAATGGAGCGGAGTAAGCACTATGGGATTGAGGTGAGGGTGATTCGCGGTGTGCGCTATGAGGGTGCCGCCTCTGCCACCGGGAAGTTGTATGTCTATGATGGCCTTTATACGATTATTGATTGCTGGTTTGATGTTGGGAAGTCGGGTTTCGGAGTTTTTAAGTATAAGCTGTGTCGGATCGATGGGCAAGCTAAGATGGGGAGCATGATCATGAAGGAGGCGCACATGCTTAAGAAGGATCCCTTGAGTTTCAAACCCATGTGTTGTGTTTCGATTGATATTTCAAACAGGATCGAGAATGTTGGGGTTCGTCTTTTCAATGATCTCGATCGCAATTACGACCCTCTCAGGTATGAGTATCTTGTGAAGACAAACTTTCCTCAGTTGGTGTTTCACCAGAGTGGGAGGGGTACGGGTTGTGATTGCGTGGACGGGTGTGTTGAAGGGTGCTTTTGTGCCATGAAGAATGGAGGGGAGTTTCCTTATAATCAGAGTGGGGTTCTCTTGAGAGGGAAGCCTTTGGTTTTTGAGTGTGGCCCCTTTTGTCATTGCCCTCCTCATTGTCGGAATCGGGTCACACAGAAGGGGATCAAAAATAGGTTGGAGGTGTTTAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCCGGTGGTTTTATATGCGAGTACACGGGGGTTGTGCTCACTAGGGACCAAGCAGAAATTTTGTCCATGAATGGTGATTCCTTGATATATCCGAATCGATTCACTGATAGGTGGGCGGAATGGGGTGATTTATCTATGATTGACTCCAATTATGTGCGTCCATCTTATCCTTCAATCCCTCCTTTGGATTTTGCTTTGGATGTGTCAAGAATGAGGAATGTTGCCTGCTATATGAGTCATAGTTCCACTCCCAATGTGTTGGTTCAGTTTGTCCTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTGTTTGCAATGGAGAACATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGACGAGTGGACAGGAAAACTCTCTATAAGTAACTGA 2121 0.5177 MNSLFSPENLPPPPGIPIPASIAAATATTSTSPAPTLIPKLEPFDGWLNTHTSQQQQQSQDPNFSNGSLDLDLNLLCDGTSDDPKNNLFSEFNRISQLFCTAFSANDPQNDAVPDPITEGLQQLRNDAFSDPFAENPQHFQNGVVSGSGLQQTPKGTSPDPDTQAIVPVPEEERSSSMMASTTPRRRCKELVRVADLGAPEQRHFRDVVRRTRKVYDSLRVLATVEDERRVDSRRGRSDLRASAVMRSCGLWLNRDKRIVGSIPGVCVGDVFLYRMELCVVGLHGHPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVITYSGHGGQDKHSRQVCHQKLEGGNLAMERSKHYGIEVRVIRGVRYEGAASATGKLYVYDGLYTIIDCWFDVGKSGFGVFKYKLCRIDGQAKMGSMIMKEAHMLKKDPLSFKPMCCVSIDISNRIENVGVRLFNDLDRNYDPLRYEYLVKTNFPQLVFHQSGRGTGCDCVDGCVEGCFCAMKNGGEFPYNQSGVLLRGKPLVFECGPFCHCPPHCRNRVTQKGIKNRLEVFRSRETGWGVRSLDLIQAGGFICEYTGVVLTRDQAEILSMNGDSLIYPNRFTDRWAEWGDLSMIDSNYVRPSYPSIPPLDFALDVSRMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSISN 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03344 706 Gene3D - 258 418 IPR036987 -
Phco8g03344 706 ProSiteProfiles YDG domain profile. 261 410 IPR003105 -
Phco8g03344 706 SUPERFAMILY SET domain 433 694 IPR046341 -
Phco8g03344 706 MobiDBLite consensus disorder prediction 47 67 - -
Phco8g03344 706 ProSiteProfiles SET domain profile. 550 693 IPR001214 GO:0005515
Phco8g03344 706 MobiDBLite consensus disorder prediction 135 160 - -
Phco8g03344 706 Pfam Pre-SET motif 445 542 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco8g03344 706 SUPERFAMILY PUA domain-like 242 424 IPR015947 -
Phco8g03344 706 SMART G9a_1 256 414 IPR003105 -
Phco8g03344 706 Pfam SET domain 561 693 IPR001214 GO:0005515
Phco8g03344 706 MobiDBLite consensus disorder prediction 134 166 - -
Phco8g03344 706 SMART preset_2 442 534 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco8g03344 706 ProSiteProfiles Pre-SET domain profile. 489 547 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Phco8g03344 706 SMART set_7 550 699 IPR001214 GO:0005515
Phco8g03344 706 Gene3D SET domain 419 706 IPR046341 -
Phco8g03344 706 Pfam SAD/SRA domain 260 414 IPR003105 -
Phco8g03344 706 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 104 705 IPR025794 GO:0016571
Phco8g03344 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 171 694 - -
Phco8g03344 706 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03344 Phco-Chr8 48063578 48065698 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco8g03344 SAD_SRA 8.3e-47 CL0178