Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03332 ATGGAAAAGGTGGCTGCGCCTCCGATTCTCATGCCGCGGAAGCGCGATCTGTCGTACGGCGTCGTTGCGGGGAGTCCTGGCGAGAGCTGGAAGTGGGACTGGGACAGCGTGCGCTTCGCAGGGAAGCCTCCCACCGATGACGTCGTGTTCGAGGAGGAGAGCGTGGCGGCGGTGGCTCCTCTGCAGCTCAACCTCGCCGGGAGGGTCAGCGGCGGCGGTAACAAGAGAGTGCGCTCGGGGTCTCCCGGAACGGCGACGTATCCGATGTGTCAGGTGGATAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACCGGAGGCACAAAGTGTGCGAGGCGCATAGCAAAGCCTCTAAGGCGCTTCTCGCCAACCAAATGCAAAGGTTTTGTCAGCAGTGTAGTAGGTTTCATCCGCTGTCCGAGTTTGACGAGGGGAAACGGAGCTGCCGCCGGAGACTTGCCGGACACAACCGCCGCCGGAGGAAAACGCAGCCGGAGGATGTTACTTCCGCCACGCCGGCCCCCGCCGCCGCTGCAGCGAATTTGGAAATCTTCAACTTGTTGACTGCAATAGCCGGAGCTTCCCAGGGAAAATTTGAAGAAAGAAGATCACAAGTTCCGGATAGAGAGCAGCTTGTTCAGATTCTCAATAGGATACCTTTGCCTGCGGATCTTGCAACCAAGTTGCTGGATGCTGGCAATGTCAACGGGAAAAAAGATCATGTACAATCGCAGACGCCATCCTCCTATCATCATCATGACCAACTGAACCACACCCCGGCTGCCCCATTAACTATGGACTTACTTGCTGTTCTTTCCACCACTCTGTCTGGATCTGGCCCTGATGCCAATGCGTCCCCCTCTCAAAATAGAAGCTGCAGCAGTGATGGCGGTAGTGTTAAGTCTAGGAGCAGTGCTGATCAGACGAGACAACAGCACTTCTTTTCAGTTGGCGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCAGTTGAAGATTCAGACTGCCAGGAGGATGTTAGAGTTAATTTACCACTGCAACTCTTTAGCTCCTCCCCGGAAGAGGACAGCTTGCCTAAACTAGCATCTTCAAGAAAGTATTTCTCGTCTGACAGTAGTAACCCTGCAGAAGAGAGGTCACCATCATCTTCTCCTCCTTCTCCTCCTGTCGTGGAGATGCAGTTTGATTTGCAGGGTGGTGCTAGAGGTCTAAAGCCGGAGAGCATCTCCTCTGGAAGAGGAGTTAATTCAAACAAGGAAACTAGCCAAAGTCATAGTTGTAATATCTCTCTCGATCTATTTAAAGGGTCAAATAACAGGATCCAACAACCTAGTTGGCTTCAAAGCGTTCCATTTCAAGCTGGCTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCACACTGGTAGAATAATGTTTAAACTATTTGACAAGCATCCTAGCCATTTCCCAGCAACATTGCGAGCACAGATTTACAGTTGGCTTTCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCACTTTATGCTTCAATGTCTTCTGCTGCCTGGGAGAAACTAGAGGAAAACTTCCTCCAACATGTTCATTCTTTAATTCAAAACTCAGATTCTGACTTTTGGAGAAATGGAAGGTTTCTAGTACATTCTGGCAGTCAATTAGCTTCACACAAAGATGGGAAGGTACGCATATGCAAATCATGGAGAACATGGAAGTCGCCAGAGTTGATATCTGTGTCCCCTCTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCTGGCACAAAGATCCACTGTACGGGTACTGGGTCTTACTCATCAGCAGAAGTCTTCAGATCTTCATATCCTGGTGTGATGTATGATAAGATAAAGTTAAGTGGTTTTAAAGTTCAGGATGTTTCACCCGGTGTTGTAGGTCGCTTTTTTATTGAGATTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGAGACCATTTGCAAGGAACTGAAATCACTTGAGTCTGAATTTGACGAGGAGGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAACATCATTTTGGAAGGCCAAGATCAAGGGAGGAGGCTTTGCATTTTTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGATTCTCATATGTGCATGAGGTTCCATCTTATTCTCTTGACAGGTTCAAATTTATACTCACATTTGCTGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTCGATGTGCTGGTTGATAAACACATGCAAGGGGAATGGTTGTCAACAGGGTCAGTGGAGATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGTACATAGGCATGGTTGATTTGCTCATCCACTATTCTATACCGAACAAAAATAGTACATCCAGGAAATATGTATTTCCTCCTAATCTTGAGGGTCCTGCTGGTATCACACCCTTGCACTTGGCAGCATGCACGTCTGGTTCTGAGAGTGTAGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGCTTGATATGCTGGGACATCCTTGTGGATGCTAATGGGCAGACTCCACATGCCTATGCTATGATGAGGAATAATAACTCTTATAATGTGCTGGTTGACCGTAAACGTGCTGCTAGACGAAGGCCTGAAATTTCAGTAACAATTGAGAAGGAGATAGCGCAATCCTCTCTAAGGCTGGAGCTTCAGCAAGAGCAAAATAACCTACTCAAACGAGGTCAGAGTCCTTGTGCCAAGTGTATGAATGCAGAAATTCGCTACAACAGGAGAGTTACAGGTTCACAGGCTATGCTTCACCGGCCCTTTATTTATTCAATGCTAGCTGTTGCTGCAGTTTGTGTATGTGTTTGTGTTTTCTTCCGTGGACGCCCATATGTAGGCTCAGTTGCTCGCTTCAGTTGGGAAACCCTGGATTATGGCACAATGTAA 3033 0.4735 MEKVAAPPILMPRKRDLSYGVVAGSPGESWKWDWDSVRFAGKPPTDDVVFEEESVAAVAPLQLNLAGRVSGGGNKRVRSGSPGTATYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAAAAANLEIFNLLTAIAGASQGKFEERRSQVPDREQLVQILNRIPLPADLATKLLDAGNVNGKKDHVQSQTPSSYHHHDQLNHTPAAPLTMDLLAVLSTTLSGSGPDANASPSQNRSCSSDGGSVKSRSSADQTRQQHFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEEDSLPKLASSRKYFSSDSSNPAEERSPSSSPPSPPVVEMQFDLQGGARGLKPESISSGRGVNSNKETSQSHSCNISLDLFKGSNNRIQQPSWLQSVPFQAGYTSSGSDHSPPSLNSDAQDHTGRIMFKLFDKHPSHFPATLRAQIYSWLSNRPSDMESYIRPGCVVLSLYASMSSAAWEKLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSQLASHKDGKVRICKSWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYSSAEVFRSSYPGVMYDKIKLSGFKVQDVSPGVVGRFFIEIENGFKGNSFPVIIADETICKELKSLESEFDEEEKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPSYSLDRFKFILTFAVERNCCMLVKTLLDVLVDKHMQGEWLSTGSVEMLNAIQLLNRAVKRKYIGMVDLLIHYSIPNKNSTSRKYVFPPNLEGPAGITPLHLAACTSGSESVVDSLTSDPQEIGLICWDILVDANGQTPHAYAMMRNNNSYNVLVDRKRAARRRPEISVTIEKEIAQSSLRLELQQEQNNLLKRGQSPCAKCMNAEIRYNRRVTGSQAMLHRPFIYSMLAVAAVCVCVCVFFRGRPYVGSVARFSWETLDYGTM 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03332 1010 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
Phco8g03332 1010 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 792 IPR044817 GO:0003677
Phco8g03332 1010 MobiDBLite consensus disorder prediction 239 256 - -
Phco8g03332 1010 Pfam SBP domain 90 163 IPR004333 GO:0003677
Phco8g03332 1010 MobiDBLite consensus disorder prediction 344 380 - -
Phco8g03332 1010 SUPERFAMILY SBT domain 88 168 IPR036893 GO:0003677|GO:0005634
Phco8g03332 1010 MobiDBLite consensus disorder prediction 278 423 - -
Phco8g03332 1010 MobiDBLite consensus disorder prediction 153 175 - -
Phco8g03332 1010 Coils Coil 690 710 - -
Phco8g03332 1010 Gene3D - 80 151 IPR036893 GO:0003677|GO:0005634
Phco8g03332 1010 MobiDBLite consensus disorder prediction 237 259 - -
Phco8g03332 1010 FunFam Squamosa promoter-binding-like protein 14 81 151 - -
Phco8g03332 1010 MobiDBLite consensus disorder prediction 278 333 - -
Phco8g03332 1010 Gene3D - 751 947 IPR036770 -
Phco8g03332 1010 SUPERFAMILY Ankyrin repeat 757 897 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03332 Phco-Chr8 47928719 47933748 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco8g03332 SBP 1.5e-29 No_clan