Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03304 ATGGCTCGTCCTTGTTTCCACAAGCTTGTTCTCTCCACCACTATTCAATCCAGACAACTGAGGATTCCGGATACTTTTCTGAGGAAATATGGGACCCAGCTTTCTACAATTGCTACCCTCACTGTTCCTGATGGTAGTATTTGGCGAATAGGATTGAAGAAAGCAGACAACAAAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTTCAACGGTACTCCATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCGTCCTTCATTGTTCATATTTTTAATTTGAGTACTGCTGAGTTAAATTATCAATCAGCCATGAGAAACCATATCGAAGGACCCTGCTATGCCAATTACAATCATATTTTCAAGGAAATGGAAGACGTAGACTCCATTGATTTGTCAGATTTGTCACCTGCGTACCTTGCATCTGGTGCCATGCAAAACAAGGGTTTTGCAGGATCTGGAGATCAACTAACACCTGGGAAGAGTCATACTCCAGCTCTGCAGAATTTGTTCAATGGTGGATCAAAACTCAATCGCGTAAACTGGGGTGATGGCGGGAGTGCTTATTCTTCCAAGGCTGCCAATTCACAAGGCACCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACCGAAGAATTGAAATTGCGTTATTCTAATGAAGAATCGGTTAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGTCCCAGGGCGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGTTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCAATCAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTACTGCGACCCTCTTATTTATACAGAGGATGCATAATGTACTTGCCTTCGTGCTTTGCAGAGAAGAATCTGAATGGGGTATCAGGATTCATTAAACTTCAATTGTCTAATGGCCGACAGTGGTCCGTTCGCTGCCTCTACAGAGGAGGTCGAGCCAAGTTAAGCCAGGGATGGTTCGAATTCACGGTGGAGAACAATCTGGGGGAAGGTGACGTCTGTGTGTTCGAGCTCCTTAGAACGAAGGAAGTTGAGCTGCAAGTTACAGTGTTTCGGGTAACTGAGGATGCAGGGTTGTTGAACTCTCCTCTTCCTGTGCAGCAGCAGAGCCAAAATATGAGCCACAACAAGCTCTTGAACCCTCATTTGCAGCATCGTGTTAGCAGTACAGTGAAATTGATTAGAAATTAG 1308 0.4335 MARPCFHKLVLSTTIQSRQLRIPDTFLRKYGTQLSTIATLTVPDGSIWRIGLKKADNKIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIFNLSTAELNYQSAMRNHIEGPCYANYNHIFKEMEDVDSIDLSDLSPAYLASGAMQNKGFAGSGDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSAYSSKAANSQGTQSTRDIGVQFNAVEFKRSTEELKLRYSNEESVNKTAKKKRKSESQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVELQVTVFRVTEDAGLLNSPLPVQQQSQNMSHNKLLNPHLQHRVSSTVKLIRN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03304 435 MobiDBLite consensus disorder prediction 154 173 - -
Phco8g03304 435 MobiDBLite consensus disorder prediction 228 260 - -
Phco8g03304 435 SUPERFAMILY DNA-binding pseudobarrel domain 291 392 IPR015300 -
Phco8g03304 435 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Phco8g03304 435 SMART B3_2 6 98 IPR003340 GO:0003677
Phco8g03304 435 SMART B3_2 298 393 IPR003340 GO:0003677
Phco8g03304 435 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Phco8g03304 435 PANTHER B3 DOMAIN-CONTAINING 3 387 - -
Phco8g03304 435 CDD B3_DNA 4 96 IPR003340 GO:0003677
Phco8g03304 435 Gene3D - 275 395 IPR015300 -
Phco8g03304 435 Pfam B3 DNA binding domain 8 96 IPR003340 GO:0003677
Phco8g03304 435 Pfam B3 DNA binding domain 301 392 IPR003340 GO:0003677
Phco8g03304 435 CDD B3_DNA 296 391 IPR003340 GO:0003677
Phco8g03304 435 MobiDBLite consensus disorder prediction 228 250 - -
Phco8g03304 435 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Phco8g03304 435 Gene3D - 1 99 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03304 Phco-Chr8 47696575 47701440 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco8g03304 B3 2.5e-17 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03304 8 47696575 47701440 Phco8g03304 8 47696575 47701440 ECH