Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03293 ATGACTTCTGTTCCTCAAGAACAACCAAGCTTAGATTTCAGACCTTCTTTTGTTCCCAAAACCGTCACTGATTTTCTCTGCTACCTTTCCTCCACCCCAAATGCCTCCCTCAACATGTCCTTGCTTCAGGACTTTCTCAGCAGATTGGAACTCGAATTGGTCAAGATCCAAGCGTTCCAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAACGATGCAATTTCAGCTTTGAAGGTGGAGTTAGCGAAATGCAGAACTTTCAAGTCTGAGCCTGTTTTGGAGGAGTTCATTCCTCTGAAGAGAGAGTATGACGAGAAGGAGGATAGTGAGAAGGAAGAGGAATGCAGGGACAAGAATGATTGGGTGAGTTCTTTCCAGCTTTGGAACACTGATGACGATGAAGCTTATAACAGGAGCAATGCATATAGATTGGAGAAGAAACAAAAGAAGATTAAGGGAGAAGAAAGACAATCTGTGGACAAGGACTATTTCCAATATGCTGGAAATAGAAATGTAGAGAGGGGATTTGTTATGCCTTTGTCCACTTACCTTGCAACAGATGAAGAATGTGTTGTCAGTGGACTTTCTCTTCAGACACCTGGAACTGCAGTCAGAAACACAAGGCAGGGATGTGGTTCCAAAACCAGCTCTTGCAGGGTGGTTTCCTCCGCCACTTCGCCCCTGATGCTGCCTCAAAGTGGCCGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGCTTTGTTAAGGCATTAGAGGAGCTTGGAGGCTCTCAAGCAGCTACTCCAAAGCAAATTAGGGAAGTCATGAGGGTTGATGGCCTGACCAACGATGAAGTAAAGAGTCATTTACAAAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCTACAGCTGCAACTTCTGATAGGTCTGGTGTAGATCTTGGAGGCTTGTGGATGCACAAAGAATCCTTGAAGGGGAGAAGTTCTGGTTCTCCTCAAGGCCCTCTCCAATTCGCTACACAATCTGGGGAAGCGACATCCACAACAGAAGGTGACAACATGGTAGATGATGATGTAAAATCGGACTTATAA 1080 0.4565 MTSVPQEQPSLDFRPSFVPKTVTDFLCYLSSTPNASLNMSLLQDFLSRLELELVKIQAFQRELPLCMFLLNDAISALKVELAKCRTFKSEPVLEEFIPLKREYDEKEDSEKEEECRDKNDWVSSFQLWNTDDDEAYNRSNAYRLEKKQKKIKGEERQSVDKDYFQYAGNRNVERGFVMPLSTYLATDEECVVSGLSLQTPGTAVRNTRQGCGSKTSSCRVVSSATSPLMLPQSGRKQRRCWSPELHHRFVKALEELGGSQAATPKQIREVMRVDGLTNDEVKSHLQKYRLHTRRVPAATAATSDRSGVDLGGLWMHKESLKGRSSGSPQGPLQFATQSGEATSTTEGDNMVDDDVKSDL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03293 359 Pfam Myb-like DNA-binding domain 238 289 IPR001005 -
Phco8g03293 359 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 348 IPR044787 GO:0003700|GO:0006355
Phco8g03293 359 SUPERFAMILY Homeodomain-like 234 294 IPR009057 -
Phco8g03293 359 NCBIfam myb-like DNA-binding domain, SHAQKYF class 236 291 IPR006447 GO:0003677
Phco8g03293 359 Gene3D - 235 293 - -
Phco8g03293 359 FunFam Myb family transcription factor 235 293 - -
Phco8g03293 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 293 IPR017930 -
Phco8g03293 359 MobiDBLite consensus disorder prediction 322 348 - -
Phco8g03293 359 MobiDBLite consensus disorder prediction 319 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03293 Phco-Chr8 47564050 47565998 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco8g03293 Myb_DNA-binding 5.4e-07 CL0123