Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03253 ATGCCTCTCTCCATCCCTTCCTTCTTCTTCTTCCTCCTCTTCCTCTTCAATCTTCAACCCTCTTTCTCCCAACAACAATTCTCATCCTTCAACATCTCACACTCCCCATGGCAACCATCTCAGAACAGAACCCTTCTATCTCCCAACAAAAACTTCACTGCAGGCTTCTTTCCCGTACCAAACTCCAGCCTCTTCACCTTTTCCATTTGGTTTTCTCAAGTCCATAATGCCGACCCTATTGTGTGGAGTGACACCACCCAAGTCAACAGTTCTGGCTCTCTTCTCATCACCTCAAAATTTGAACTTCTCCTCAATGGTTCACCCTTTCAAGATACTGCCAATACTAATGCTTCCCAACTTGTTCTCGAGAACAATGGAAACTTGGCTTTTGGGAACTGGAGCAGCTTCAAGAACCCCACCAACACCGTTTTGCCCAACCAGAACTTCACAGGGATTGAGCTTCTCTCCAGCAATGGGAAATTCAGGTTCATCAAGTCTCAGTTTCTGGTCCTCAACTCCACCGCTGATCAATACTATAGCACCCCAAATCCCTTGGTGAGCATGGATGATGCAGGGAAAATGAGCATGGTAGGTAACTCTTTTCTCACTTCAGATTATGGAGACCCAAGATTGAGGAAAGTGGTCCTTGATGATGATGGGAATCTGAGGATCTATAGCTTCTACCCTGAGCAGAATAATAAGTGGGTTGAGGTTTGGAAAGGGTTATGGGAGATGTGCAGGATCAAAGGCAAATGTGGGTCTAATGCAATTTGTGTGCCTGGAGAGGATTTGAACACTTCTACTCATTGTGTTTGTCCATCTGGGTTCAACCCAAACCAAGGTGGACCTGAAGAGGGTTGCACAAGGAAAAACTCTCTTTCCCAACGCACCCAATTTCTGAGGTTGGACTATGTGAACTACACCAGTGATGGCAGTTTGACCGACATTAAAGCTGGGAACTTCACAATCTGTGAGTCCGGTTGCTCAACCGATAAAACTTGTCTTGGTTTTGGGTTCAAATATGATGGATCTGGCTACTGTGTGTGGGTGACTGGGACAGCCCTTCGATTTGGGTACTGGTCACCGGGCACTGAAGCTGCCTTTTTTCTAAAAGTTGATAAATCTGAGTCAACACCATCCAACTTCATTGGTCTCACTGAGGTGATGCAAACCACATGCCCAGTGAACTTGAGCCTGCCACTGCCTCCAAAGGACTCAAACACCACTGCCAGAAACATTGCCATAATATGCACACTTTTTGCTGCAGAACTCATAGCTGGGGTGGCCTTCTTCTGGTCCTTCCTGAAGAGGTACATCAAGTATAGGGACATGGCCACCACACTAGGCCTCGAGCTTCTCCCTGCTGGGGGTCCCAAGAGGTTCACCTACTCAGAAATCAAGGCTGCTACCAATGACTTCTCCAATCTCATAGGCAAAGGAGGCTTTGGAGATGTCTACAAAGGTGAGTTGCCAGACCACAGGGTGGTGGCAGTGAAGTGCCTCAAGAATGTCACAGGTGGAGATGCTGAGTTTTGGGCAGAAGTCACAATCATTGCCAGAATGCACCACCTCAACTTGGTGAGGCTGTGGGGGTTCTGTGCTGAGAAGGGCCAAAGGATACTAGTCTATGAACACATCCCCTGTGGCTCAATGGACAAGTACCTCTTCAGGATCAACAAGTCTCACAGTAATAATGACAGCCATCTCAAAGACCAATCAAGTCCAAACACACCACAACAAAAGCCAACTTTGGATTGGAACATGAGGTACAGAATAGCCCTTGGTGTGGCAAGGGCTATTGCCTACTTACATGAGGAGTGTTTGGAGTGGGTTTTGCACTGTGACATCAAGCCTGAGAACATTTTACTTGGTGATGACTTTTGCCCCAAAATATCAGATTTTGGGCTGGCCAAGTTGAGGAAAAAGGAGGACATGGTGACCATGTCAAGGAGGAGGGGCACACCAGGGTACATGGCCCCTGAATGGATCACTGCTGAACCAATCACTTCAAAAGCTGATGTGTATAGTTTTGGCATGGTGCTTTTGGAGCTTGTGAGTGGAATTAGGAACTTTGAAATCCAAGACTCAGTGCTTAGGAGTGAGGAGTGGTACTTCCCAGGTTGGGCCTTTGATAAGTTCAAGGAGATGAGAGTGGAGGACATTTTGGATAGGCAGATTAGGAATGATTATGATAGCAGGGCCCACTTTGACATGGTTAATAGGATGGTCAAGACTGCCATGTGGTGTCTACAAGAGAGGCCTGAGTCGAGGCCCACTATGGGCAAGGTGGCCAAGATGTTGGAAGGGACTGTGGAGATCCTTGAGCCCAAGAAGCCCACTGTTTTCTTCCTTGGGGAAGACGAGTTGCCTCTTTCCGACGCTGCTTCTGACAAAAACATCATTCTACCATCCCAAATGTCGGCCACTTTGGACCATGCTGGTCAAAGAGCTGAAGCTTTTCCCCAATCCACTGCAATACCAAATTGGACTATTCATGTGTCAGACATAAGAACAGTTAAGGTTAGCAACATATCACTGGTTACTTCCAAGATGGAGATTCAAGAATTCTTTTCATTCTCAGGTGATATTCGGTATATTGAGATGCAAAGGGAAAGTGACCGCACTCAGGTTGCTTATGTTACATTTAAGGATACACAGGGAGCAGACACAGCAGTTCTCTTAACGGGTTCAAAGATAGGTGATCTATATGTCACAATCACACCTGTAGAAAAGTATCATCTACCCCCTGATGCTCTTCCAGCAAGTCCGACAAACCAAAGTGCTGATGCAGTGAAGAAGGCTGAAGATGTAATGAGCACTATGCTTGCTAAGGGTTTCATTCTAGGAAAGGATGCTATAAACAAGGCAAAAGCCTTTGATGAGCGTCACCAGTTGATCTCAAATGCTTCTTCCACAGTTGCTTCCATTGATCGTAGAATGGGTTTCAGTGACAAACTAAGTATTGGAACAGCCATTGTGAATGGAAAGGTGAGAGAAATGGATGAAAAGTACCAGCTTTCTGAAATGACAAAGTCTGCTATTGCTGCTGCAGAGCAAAAGGCAAGCAGTGCCGGATCTGTTATCATGAGCAATTCTTATGTATTAACTGGAGCTTCATGGGTGTCTAGTGCCTTTGGTGCTATAGCAAAGGCAGCCGGGGATGTCAGCACGATGACAAAGGAGAAGGTTGAACAGGCCGAGGTGGAAAGGAACGAGATGATTTATAGTGAAAGGAAAGGGACTGTTGATGAATTTGCAAAGAAACACTTTGACGATGCTTCAGACATGGGCCCTGCAGTAGTTCCTATTAATTCATATGATGACCATAAGCTGGAAATTATATAA 3345 0.4595 MPLSIPSFFFFLLFLFNLQPSFSQQQFSSFNISHSPWQPSQNRTLLSPNKNFTAGFFPVPNSSLFTFSIWFSQVHNADPIVWSDTTQVNSSGSLLITSKFELLLNGSPFQDTANTNASQLVLENNGNLAFGNWSSFKNPTNTVLPNQNFTGIELLSSNGKFRFIKSQFLVLNSTADQYYSTPNPLVSMDDAGKMSMVGNSFLTSDYGDPRLRKVVLDDDGNLRIYSFYPEQNNKWVEVWKGLWEMCRIKGKCGSNAICVPGEDLNTSTHCVCPSGFNPNQGGPEEGCTRKNSLSQRTQFLRLDYVNYTSDGSLTDIKAGNFTICESGCSTDKTCLGFGFKYDGSGYCVWVTGTALRFGYWSPGTEAAFFLKVDKSESTPSNFIGLTEVMQTTCPVNLSLPLPPKDSNTTARNIAIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEHIPCGSMDKYLFRINKSHSNNDSHLKDQSSPNTPQQKPTLDWNMRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITAEPITSKADVYSFGMVLLELVSGIRNFEIQDSVLRSEEWYFPGWAFDKFKEMRVEDILDRQIRNDYDSRAHFDMVNRMVKTAMWCLQERPESRPTMGKVAKMLEGTVEILEPKKPTVFFLGEDELPLSDAASDKNIILPSQMSATLDHAGQRAEAFPQSTAIPNWTIHVSDIRTVKVSNISLVTSKMEIQEFFSFSGDIRYIEMQRESDRTQVAYVTFKDTQGADTAVLLTGSKIGDLYVTITPVEKYHLPPDALPASPTNQSADAVKKAEDVMSTMLAKGFILGKDAINKAKAFDERHQLISNASSTVASIDRRMGFSDKLSIGTAIVNGKVREMDEKYQLSEMTKSAIAAAEQKASSAGSVIMSNSYVLTGASWVSSAFGAIAKAAGDVSTMTKEKVEQAEVERNEMIYSERKGTVDEFAKKHFDDASDMGPAVVPINSYDDHKLEII 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03253 1114 Gene3D Transferase(Phosphotransferase) domain 1 566 778 - -
Phco8g03253 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Phco8g03253 1114 SUPERFAMILY RNA-binding domain, RBD 826 912 IPR035979 GO:0003676
Phco8g03253 1114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 837 911 IPR000504 GO:0003723
Phco8g03253 1114 Gene3D Phosphorylase Kinase; domain 1 445 545 - -
Phco8g03253 1114 SMART serkin_6 471 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g03253 1114 CDD STKc_IRAK 477 769 - -
Phco8g03253 1114 Pfam S-locus glycoprotein domain 207 279 IPR000858 GO:0048544
Phco8g03253 1114 PANTHER OS07G0415500 PROTEIN 5 782 - -
Phco8g03253 1114 Pfam Protein kinase domain 475 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g03253 1114 ProSiteProfiles Protein kinase domain profile. 471 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g03253 1114 ProSitePatterns Protein kinases ATP-binding region signature. 477 499 IPR017441 GO:0005524
Phco8g03253 1114 Gene3D - 833 907 IPR012677 -
Phco8g03253 1114 FunFam Serine/threonine-protein kinase 546 778 - -
Phco8g03253 1114 SUPERFAMILY Protein kinase-like (PK-like) 454 768 IPR011009 -
Phco8g03253 1114 FunFam S-receptor-like serine/threonine-protein kinase 443 545 - -
Phco8g03253 1114 SMART rrm1_1 838 907 IPR000504 GO:0003723
Phco8g03253 1114 ProSiteProfiles PAN/Apple domain profile. 287 373 IPR003609 -
Phco8g03253 1114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 840 901 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03253 Phco-Chr8 47196579 47205936 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco8g03253 Pkinase 1.4e-44 CL0016