Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03245 ATGAATCGCCTGGATACAGAAATTGGACATAAATGGGTTCCGCGCTGGCTCGTGGAGTGCACACGCTTCATCCCTTTCTCTCTCTCAAAACCGTTTTTTGGATTAGATTCAGATTGTGGCCGTGGCAGCACAAACCCCACCATGGATCACCCAAATCCACCACACTCCAACAAAGCCAAACACGCTTCAGAGTCGCTCCGCCGCGCCACTTCCTCCTCTAACCGTTTCCGCAGCTCCCACCTTCTCAGGGAGAGAGAAGGAACGGGTGAAGGGGAAAAGGAGGATCCGAGTGCCTCACGGAAGGTTCTGAAAGCTGACCGCGAGAAACTCAGAAGGGATCGACTCAACGAACACTTTCAAGAGTTGGGAAACACGTTAGATCCGGATAGACCCAAGAATGACAAGGCAACTATCCTTACTGAAACCGTCCAAATGCTAAAGGACTTAGCTGCTGAAGTTAGTAGGCTTAAAACTGAACATAAAGCACTTTCTGAAGAGTCACACGAACTAATGCAGGAAAAAAATGAACTCAGAGAAGAGAAGACATCTCTTAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTGAGAATCATGTTCCCATCATGGAGTGCAATTGACCATTCTGTTGTCATTAATCCACCTTACTCTTATCCTCTTCCTATACCTATCCCTCCTGCACCAATTTCGATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCTCATCACATTCCTAGTCCTTGTTCAATGTATGTCCCATATTCTACTCCATCTAATGCCCCAGTTGAGCCACCATCTGTGCTGTATGCTTCCACATCCCATGTGTCGAACCAAAGGGAATCTTTTAGCAAGTCATCGGGTGATAGAAGGCCTAGTAGTGATGCTGAAAGATGTAACAAATCTCACGATGTGGCCACAGAACTTGAACTCAAGATGCCTGGATCGTCATCAACACAACAGGATTGCACTTCTGGAGGAAGGAAGGGCAAGCATTCAGTGATAGAAGATAGAACTATCATAGGTGGCAGTGCTGGGAGTGCTTCAAGCCATTATTCTTCGTCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACATTCCAAAGACTGATAACTGA 1143 0.4602 MNRLDTEIGHKWVPRWLVECTRFIPFSLSKPFFGLDSDCGRGSTNPTMDHPNPPHSNKAKHASESLRRATSSSNRFRSSHLLREREGTGEGEKEDPSASRKVLKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETVQMLKDLAAEVSRLKTEHKALSEESHELMQEKNELREEKTSLKSDIENLNAQYQQRVRIMFPSWSAIDHSVVINPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPHHIPSPCSMYVPYSTPSNAPVEPPSVLYASTSHVSNQRESFSKSSGDRRPSSDAERCNKSHDVATELELKMPGSSSTQQDCTSGGRKGKHSVIEDRTIIGGSAGSASSHYSSSQGLQDSSNSVGDIPKTDN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03245 380 MobiDBLite consensus disorder prediction 291 315 - -
Phco8g03245 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 149 IPR011598 GO:0046983
Phco8g03245 380 MobiDBLite consensus disorder prediction 43 109 - -
Phco8g03245 380 CDD bHLH_AtILR3_like 104 178 - -
Phco8g03245 380 MobiDBLite consensus disorder prediction 78 109 - -
Phco8g03245 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 170 IPR036638 GO:0046983
Phco8g03245 380 MobiDBLite consensus disorder prediction 350 380 - -
Phco8g03245 380 SMART finulus 105 155 IPR011598 GO:0046983
Phco8g03245 380 PANTHER TRANSCRIPTION FACTOR BHLH121 62 378 IPR044579 GO:0003700|GO:0006879
Phco8g03245 380 MobiDBLite consensus disorder prediction 319 334 - -
Phco8g03245 380 MobiDBLite consensus disorder prediction 280 380 - -
Phco8g03245 380 Pfam Helix-loop-helix DNA-binding domain 100 149 IPR011598 GO:0046983
Phco8g03245 380 Coils Coil 139 194 - -
Phco8g03245 380 Gene3D - 97 175 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03245 Phco-Chr8 47125841 47131101 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g03245 HLH 3.8e-10 No_clan