Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03150 ATGGCTGGACCTTCGTGGTTGGTGGACAAAAGTAGAATTGCGACCAAAATAAAATGTGCATCAGGAACGTGTGATCCTAAGAAGATTATATGGAACAGCAATCCTACCAAGCCTTGCCCAAATTGTCAACATGATATTGACAATAGTGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAAGAGATAATCTGGCACTTGCTTGCAAAAGTCGGGGTAGAAGATTCTAAACCTCATCCTTTCATTGATGAATTTATTACTAATCTTGAAGAAGATGATGGAATTTGCTGTGCTCATCCTCAAAATTTACCTGGTATTAAGCAAGATGGAAGTGCGTCCTACTTTTTCCATAGAGCAATCAAGGCTTACAACACTGGCAACCGAAAGCGTAGAAAAATAACAAGTCAAGATTTTGGTGATGCCCGCTGGCACAAGACTGGAAGGACTAAACCAATTGTCTTGAATGGGGCTCAAAAAGGCTGGAAAAAGATTATGGTTCTGTATGAAAACAACGGAAGAGGAGGAAAAGTTGAAAAAACTAATTGGGTTATGCATGAATATCACCTAGGAACAAAAGAAGATGAACATGATGGGGAGTACATTTTCTCTAAAGTGTTTTACCAACAAGTCGTCAAATTGGGTGATAAAGATGACCAAGATGTTCCTGAAGCAATCGAATCAACAATTGTGGAGGTGGTTCCAAACACTCCCAACTTAGTGACTCTTGATGCTCTTTGCAATGAAAGGCAGAGCGCAGATCTAGACCAAGGACAAGAAACACATAACATTCCACAGCTGTCTCAGATGGATTGTTTATATGAAATTCAAGAGGATTACCAAGAACTTGCAACTGAATCTCAGCATAATGAAGGGGTGGATAATAAAGAAAGTAATGCCGAGGAAGGCCAAAAATGGTGGGACAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTTGACGCTCTGTCTTTGTGTGACGATCTCCTCCACAGCCAGTCTCCCAGTAGAGATGGAAAACATGAAGATCATAAGAACCATCCTGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAATGTCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGTCCATGATCCTGCAAACATAGAGAATGATACCTCTTCAGAGTTTCGACTAAGTCAGCTGGAATTTGGTTCACAGGACAGCTTTATTTCCTGGGGATACAAGGCATTGAACTAA 1251 0.4085 MAGPSWLVDKSRIATKIKCASGTCDPKKIIWNSNPTKPCPNCQHDIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVEDSKPHPFIDEFITNLEEDDGICCAHPQNLPGIKQDGSASYFFHRAIKAYNTGNRKRRKITSQDFGDARWHKTGRTKPIVLNGAQKGWKKIMVLYENNGRGGKVEKTNWVMHEYHLGTKEDEHDGEYIFSKVFYQQVVKLGDKDDQDVPEAIESTIVEVVPNTPNLVTLDALCNERQSADLDQGQETHNIPQLSQMDCLYEIQEDYQELATESQHNEGVDNKESNAEEGQKWWDSESQNLLDSQQLVDALSLCDDLLHSQSPSRDGKHEDHKNHPGLSVYAQLGPECLKKDIEECQNLVHDPANIENDTSSEFRLSQLEFGSQDSFISWGYKALN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03150 416 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Phco8g03150 416 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 377 IPR044799 GO:0003700
Phco8g03150 416 MobiDBLite consensus disorder prediction 290 311 - -
Phco8g03150 416 MobiDBLite consensus disorder prediction 339 358 - -
Phco8g03150 416 Gene3D NAC domain 67 219 IPR036093 GO:0003677|GO:0006355
Phco8g03150 416 FunFam NAC domain-containing protein 8 67 220 - -
Phco8g03150 416 MobiDBLite consensus disorder prediction 341 356 - -
Phco8g03150 416 SUPERFAMILY NAC domain 44 216 IPR036093 GO:0003677|GO:0006355
Phco8g03150 416 MobiDBLite consensus disorder prediction 290 313 - -
Phco8g03150 416 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03150 Phco-Chr8 46117325 46122061 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco8g03150 NAM 3.3e-23 No_clan