Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03139 ATGCTTCCCCGCAAAATGGGGTTCCGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGGAAAATTCAAGTTTTCCCCAAAGAGCTTCCTCTGTCGTTGGAGCTTGTCACGCAAGCAATTGAGGGGTGTAGGCAGCAATTGTCTGGAACGGTTACGGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCAACCGATGAAGGACCTGTTTTTGAGGAGTTCATTCCTATTAAGAAAATGGCATCTCAAGATTCTGTTGAAGAAGAAGAAGAAGAAGAAAATGAAGATGAAGATGAGCAACATTCTCATCAGCACAAGAAAACCGCTTCTGATAAAAGGAAATCAGATTGGCTTAGATCTGTTCAGTTGTGGAATCCTAATCCCCCTCCTACCAAAGAGGATGTGCCTAGAAAAGCAAATGTTGTTGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAGAGTGGTGTAGTTGATGGAAAGGTTAATAATTATGCATCAGCAATTGGTAAAGCACCCTCTTCACCACCAGTGCCTGCTACAAGTTCCACAGGACCAGTGAGAATAGACAGCAAAAAAGAGGAGAAAGGACAGGCTCAGAGAAAGCAACGGCGGTGTTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCACTTCAACAACTCGGAGGTGCAGATTCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGCCATTTACAGAAATTTCGTCTGCACACTAGAAGAAGTCCCATAATGCACAACAACGCAAGTTCACAAGCAGCCCCTTTGTTTCTTGTAGGGAACATTTTTGTGCAGCCACCAGAATATGGTGCAGTAGCTACCTCATCAGCCTCTGGAGGAGAATTGACCACAGTTACCGCTCCAACTGGAATATATGCACCAGTGGCTGCACACCCTCCACCTGTCACAAACACACCAATAATGAAGCATTTACATTCTCAAGAAAGGCCTAACAATCACAGTGCTCAATCAAACTCACCTGCCTCATCATCTTCCACACACACCATCACAACTACTTCATGTGCCCCTTGA 1113 0.4519 MLPRKMGFREYIEALEEERRKIQVFPKELPLSLELVTQAIEGCRQQLSGTVTEYNLNGQSECSEQTSTDEGPVFEEFIPIKKMASQDSVEEEEEEENEDEDEQHSHQHKKTASDKRKSDWLRSVQLWNPNPPPTKEDVPRKANVVEVKRNGGAFQPFQREEKSGVVDGKVNNYASAIGKAPSSPPVPATSSTGPVRIDSKKEEKGQAQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIMHNNASSQAAPLFLVGNIFVQPPEYGAVATSSASGGELTTVTAPTGIYAPVAAHPPPVTNTPIMKHLHSQERPNNHSAQSNSPASSSSTHTITTTSCAP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03139 370 MobiDBLite consensus disorder prediction 101 117 - -
Phco8g03139 370 MobiDBLite consensus disorder prediction 176 213 - -
Phco8g03139 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 343 IPR044787 GO:0003700|GO:0006355
Phco8g03139 370 Pfam Myb-like DNA-binding domain 212 261 IPR001005 -
Phco8g03139 370 Gene3D - 209 267 - -
Phco8g03139 370 MobiDBLite consensus disorder prediction 60 117 - -
Phco8g03139 370 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Phco8g03139 370 FunFam Myb family transcription factor 209 267 - -
Phco8g03139 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Phco8g03139 370 Coils Coil 82 102 - -
Phco8g03139 370 MobiDBLite consensus disorder prediction 340 370 - -
Phco8g03139 370 MobiDBLite consensus disorder prediction 196 213 - -
Phco8g03139 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03139 Phco-Chr8 45928398 45930508 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco8g03139 Myb_DNA-binding 2.2e-05 CL0123