Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03092 ATGACTTCACCAACCAACCTCTCTTCCACTGTAGTTCATTTCTGTAAGATTATCCTCAGACCAAACCTTGCACATGGAATACTTAATCTCCCAAAAATATTCACTAGAAAACATGGAGATGGAATGTCAAATCCTGTGTTTCTTAGATCTCCTGATAGTACTGAATGGAAAATATACTGGGCCAGGAGTGATGGTGAGATTTGGTTTCAAAATGGATGGAAGGAGTTTGCCACATACTATTCTCTAGATCATGGCCACTTGCTGTTCTTTAAATACCAGGGAACTTCTCATTTTCATGTACACATATTTGACAATAGTGCCCTTGAAATAGACTATCCTTCCCACACTACTCATTGTAGAAAGGAAGATCTTGTCCACATTTCTGATGATTCTGATGAACTTTTGTTGGAGCAATTTTCATGTCAAAATACTAGATTGAAACCAACTCTGTCATCTCCTCAACCTTGTAAGAAAATGAAAAATAGCATAACTACAAATGTTGTGAGAAGCCCCAACTGGGCACATTTGCATCAGCATGTCCAAACTAAAAGTCCTAGCTTTCAAGAGGAAAAATCTAGAAAGCAAAAATTACATGAAGTTGAAGTTAAACACCCTTTTAACAGTGAATTCTCTAAAGTGGAGCAGTTAACATCTACGGCTTTAAAGAAAGCCATAACTTTCAGACCTGAACACCCCTTTTTCCTGCTTGTCATGAAGGAGTCCATGATTAAAAGATATTACCTGAAAATACCACCACATTTTGTAGAAAAATATTTGAAGAAGACACGTGAAGTTGTCAACCTTGAGGTATTGGATGGGAGAACATGGCCTGTTATTTATTCTGCTCCTAAAATTAATGGGGGATGGCAGAAATTTGCATCAGAAAACAATTTGAATGTGGGGGATGTTTGTGTTTTTGAGATGGTCCAGAGGATCCAGGGCCTTTCTTTCATAGTTTCAATCTTTAGAGGTGCAGAGGAACCAAGTTGCCCCATTTCACAAGGTAGCACTTATTATTACTCTCTAAAAACAGCTAAAACTGATCTTTCAGAATGCTGCTTAGTGTATTCAACAACTGACTTGACATGTGGAAGTAGTAGTCAAAGATTTTCACAGTTGGAAAGTGACTTCAAGTCAAAGATCTTAACCAGAGCTTTTAAAGAAGCTAGCAAATTCAAATCAGAAAATCCCTTTTTCATGGTTACTTTACAATCGAAGGAAAACACAACCAGATACCTGTGTGTGCCTGTCTACTTTGCAAGGAAGTATTTTATAAACTTTAATCAGAATGTGATGATGATGCAGTTTAGAAACAAATTGTGGCCTGTGAAGTTTGTGTATAATTCTTCATCTTCATCTAAGTTCAGTGCTGGTTGGGCCTCATTTGCAAGAGAAAACAACCTGAAACCTGGAGATATTTGTGTCTTTGAGCTTGTCAATAGAAAAGATGCAACACTAGTTGTTCATGTTTTCAGAAGTCATGGTAATTAG 1491 0.3722 MTSPTNLSSTVVHFCKIILRPNLAHGILNLPKIFTRKHGDGMSNPVFLRSPDSTEWKIYWARSDGEIWFQNGWKEFATYYSLDHGHLLFFKYQGTSHFHVHIFDNSALEIDYPSHTTHCRKEDLVHISDDSDELLLEQFSCQNTRLKPTLSSPQPCKKMKNSITTNVVRSPNWAHLHQHVQTKSPSFQEEKSRKQKLHEVEVKHPFNSEFSKVEQLTSTALKKAITFRPEHPFFLLVMKESMIKRYYLKIPPHFVEKYLKKTREVVNLEVLDGRTWPVIYSAPKINGGWQKFASENNLNVGDVCVFEMVQRIQGLSFIVSIFRGAEEPSCPISQGSTYYYSLKTAKTDLSECCLVYSTTDLTCGSSSQRFSQLESDFKSKILTRAFKEASKFKSENPFFMVTLQSKENTTRYLCVPVYFARKYFINFNQNVMMMQFRNKLWPVKFVYNSSSSSKFSAGWASFARENNLKPGDICVFELVNRKDATLVVHVFRSHGN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03092 496 SUPERFAMILY DNA-binding pseudobarrel domain 7 106 IPR015300 -
Phco8g03092 496 CDD B3_DNA 13 104 IPR003340 GO:0003677
Phco8g03092 496 SMART B3_2 398 494 IPR003340 GO:0003677
Phco8g03092 496 SMART B3_2 233 325 IPR003340 GO:0003677
Phco8g03092 496 SMART B3_2 14 106 IPR003340 GO:0003677
Phco8g03092 496 Gene3D - 380 494 IPR015300 -
Phco8g03092 496 Gene3D - 213 326 IPR015300 -
Phco8g03092 496 Gene3D - 7 107 IPR015300 -
Phco8g03092 496 CDD B3_DNA 232 323 IPR003340 GO:0003677
Phco8g03092 496 ProSiteProfiles B3 DNA-binding domain profile. 398 494 IPR003340 GO:0003677
Phco8g03092 496 SUPERFAMILY DNA-binding pseudobarrel domain 228 323 IPR015300 -
Phco8g03092 496 Pfam B3 DNA binding domain 233 324 IPR003340 GO:0003677
Phco8g03092 496 Pfam B3 DNA binding domain 398 493 IPR003340 GO:0003677
Phco8g03092 496 Pfam B3 DNA binding domain 21 105 IPR003340 GO:0003677
Phco8g03092 496 ProSiteProfiles B3 DNA-binding domain profile. 233 325 IPR003340 GO:0003677
Phco8g03092 496 CDD B3_DNA 398 492 IPR003340 GO:0003677
Phco8g03092 496 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Phco8g03092 496 PANTHER B3 DOMAIN-CONTAINING 380 490 - -
Phco8g03092 496 SUPERFAMILY DNA-binding pseudobarrel domain 392 494 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03092 Phco-Chr8 45292543 45295407 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco8g03092 B3 2.6e-18 CL0405