Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03090 ATGGCTTCCAAACCCCGCACCGTTGAAGAGATCTTCAGGGATTTTAGAGCCCGAAGAAGCGCTATTATTCGCGCACTCACTCACGACGTTGATGAATTTTACGGACTCTGTGATCCAGGTAAGGATAACTTGTGCCTCTATGGACATCCAAACGGGGCCTGGGAGGTAGCTCTGCCATCGGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAACTTTGCCAGGGACGACCTGAGCCGCAAGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCATGGCTGCTTGCAGTGGCTTTTTACCTTGGAACTCGGCTTAACCACAATGAAAGAAAACGCCTATTTGGTTTGATCAATGCTCTTTCCACCGTTTTTCAAGTTGCAAGTGGCAATAAACCAATTAAGGACAAGCTCACCATGGATAATGGAAGCAAATCTGGTGTAAGCATCGAGGTAGCAATGAAAGGTGAGCATATTAGAATATTTTGTGGAAGCTGTGGTGAAAAATACAATGGAGATGAACTTTGGATGGGGTGCGATATATGTGAGTGGTGGTACCATGGAAGGTGCGTTATGATTAACCCTGCAAAGGCTGACACCCTAAAGCGCTATAAATGTCCATCATGCAGCTTGAGGAGGAGCAGGTCATAG 660 0.4742 MASKPRTVEEIFRDFRARRSAIIRALTHDVDEFYGLCDPGKDNLCLYGHPNGAWEVALPSEEVPPELPEPALGINFARDDLSRKDWLSLVAVHSDSWLLAVAFYLGTRLNHNERKRLFGLINALSTVFQVASGNKPIKDKLTMDNGSKSGVSIEVAMKGEHIRIFCGSCGEKYNGDELWMGCDICEWWYHGRCVMINPAKADTLKRYKCPSCSLRRSRS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03090 219 CDD PHD_AL_plant 165 215 IPR044104 -
Phco8g03090 219 FunFam PHD finger alfin-like protein 158 214 - -
Phco8g03090 219 ProSiteProfiles Zinc finger PHD-type profile. 163 215 IPR019787 -
Phco8g03090 219 SUPERFAMILY FYVE/PHD zinc finger 164 216 IPR011011 -
Phco8g03090 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 213 IPR013083 -
Phco8g03090 219 ProSitePatterns Zinc finger PHD-type signature. 166 212 IPR019786 -
Phco8g03090 219 SMART PHD_3 165 213 IPR001965 -
Phco8g03090 219 Pfam PHD-finger 165 213 IPR019787 -
Phco8g03090 219 PANTHER CPG BINDING PROTEIN 4 218 IPR045104 GO:0006355|GO:0042393
Phco8g03090 219 Pfam Alfin 7 131 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03090 Phco-Chr8 45278127 45280932 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco8g03090 Alfin 5.9e-62 No_clan