Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03088 ATGGAGAAAGATCACAACTATTCGGTACAGACATATATGTATATGTGTGTGCATATATATATCTTCCGTGGCTCTTTTATGTTTTTGTCTCCATTAAAGCTTTTCATGTCAGATCTTTTCACCCTCTCTTATCATCACCGTATGTTGTTTTGCTCCAATTTTGCTGAATCTTCATCACTGCAGGCACCAATATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGATCACCACCAACACCACCTTTATCCACCAAATCAGCATCAACAGCACCTCATGAAGTTCCAAGCTTCTGGTGATGAAAACAACAGCGGATCAATGGTGGATTACATGCCTCAAACACCACCACCACCCCATGGTTTTTATGGTGGTTCTAGCACGGGCACAATATCCTATGATAAGTTGAGTTTTGCAGACGTGATGCAGTTTGCAGATTTTGGACCTAAGCTGGCTTTGAATCAAACAAAAAGTTGTGAAGAATCTGGGTTAGATCCAGTTTACTTTCTCAAGTTTCCAGTGTTAAACGACAAGATGGAGGAGGAGGGGAACCTGATGGTGAATGATGACCCAGATGGTGATGCAGAGAATCATGATGAGAGGTACAACTTGTTGGATGTGGAGGACAAGTCAAGGGTTGATGAAGAGGGAGTGATGATGAGAGAAGATGAAGAGACTCGGATTTCTGATGACAACAATTCCGTGCAGATTCGGTTACTTGGTCAGGAAGAGACTCAGAAGAATGCAGGAGTGCAGGAAAGCAAGAGCAAGAGGAAGAGACCAAGAACCGTTAAGACAAGTGAAGAAGTTGAGAGCCAGCGCATGACCCACATAGCAGTTGAAAGGAATCGTAGGAAGCAAATGAATGAGCATCTTCGTGTTCTTAGATCACTTATGCCTGGTTCATATGTCCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAGTTTGTGAGGGAATTGGAGCAACTGCTTCAGTGTTTGGAGTCACAAAAGAGGAGGAGGCTACTGGGAGAAGCTCAAGCAAGACAAGTTGGGGACCCCTCCCTTGCACAACAACAACCTCCTTTCTTTCCACCATTGCCAATTCCGAATGAGCAGATGAAGCTTGTGGAGTTGGAGACTGGACTTCGTGAAGAAACTGCAGAGAGCAAGTCTTGTTTGGCTGACGTTGAAGTGAAGCTTCTAGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTTGAAGATCTGCAACTAATAATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCAGCGCAGAAGATATAGCAAGTTCGGTTCAGCAGATATTCAATTTTATCCATGCAAACACTAGCATGTGA 1437 0.4356 MEKDHNYSVQTYMYMCVHIYIFRGSFMFLSPLKLFMSDLFTLSYHHRMLFCSNFAESSSLQAPISMPPSFNTLDYSLDHHQHHLYPPNQHQQHLMKFQASGDENNSGSMVDYMPQTPPPPHGFYGGSSTGTISYDKLSFADVMQFADFGPKLALNQTKSCEESGLDPVYFLKFPVLNDKMEEEGNLMVNDDPDGDAENHDERYNLLDVEDKSRVDEEGVMMREDEETRISDDNNSVQIRLLGQEETQKNAGVQESKSKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPSLAQQQPPFFPPLPIPNEQMKLVELETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFSAEDIASSVQQIFNFIHANTSM 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03088 478 MobiDBLite consensus disorder prediction 251 275 - -
Phco8g03088 478 FunFam Basic helix-loop-helix transcription factor 264 339 - -
Phco8g03088 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 339 IPR036638 GO:0046983
Phco8g03088 478 Gene3D - 265 339 IPR036638 GO:0046983
Phco8g03088 478 Pfam Helix-loop-helix DNA-binding domain 274 325 IPR011598 GO:0046983
Phco8g03088 478 PANTHER TRANSCRIPTION FACTOR FAMA 166 469 IPR044283 GO:0003700|GO:0010052
Phco8g03088 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 324 IPR011598 GO:0046983
Phco8g03088 478 CDD bHLH_AtFAMA_like 276 343 - -
Phco8g03088 478 SMART finulus 279 330 IPR011598 GO:0046983
Phco8g03088 478 MobiDBLite consensus disorder prediction 242 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03088 Phco-Chr8 45259628 45261459 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g03088 HLH 1.1e-09 No_clan