Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03046 ATGAGAGCAGGGAAAGGGAATCAGGAAGAGGATGAGTACGACGAAGAAGACTTCGGTTCTTCCAAGAAACAAAGCACTTCCTCTGCCCCCAACACCAACAAAGATGGAAAAGCCATTGATAAGGCTAGTGCAATAAGATCGAAGCATTCTGTAACCGAGCAGCGGAGAAGAAGCAAGATAAATGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACAGCATCATTTTTGTTAGAGGTGATTGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAGTATGAAGGTTCATATCAAGGTTGGGGTCAAGAGCCCTCGAAGTTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAAAGCTTCACCGGTCAACCTACGGCTATAAAGAATGGTTTGGGTACTCTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAATGTTAGTATCTCTCCAACTATGCTTAGTGGCACACAAAACACGATTGATCCTGATCAGAGCAGGGATATTGTCAACAAGACAGCAGAGAGGCAACCTGATTTAGTGAGCAAGGGAATACCTCTTCCCTTGCCTATGCATGCAAATATGTCCGTTCCTGCCAGAAGTGATGGTGTACTTGCACATCCTCTTCAGGGAACTGTTTCTGATGCACAATCAACTGAATGCCCAACAACTAGTGAACCACAGAATCACCAGGATGAACTAACAGTTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGTTATTGAATAATCTAACTCAGGCATTACAAAGTGCCGGTTTAGATCTGTCACAAGCAAGCATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAATGGATTAAGCTGTGGGACCTCTTCTCCCAAGAATCATGACAACCCTCCTTCAAATAATCAAACAATTGCACATTTTAGAGATGCAGGCAGTGGAGAAGACTCAGATCAAACACAAAAACGAATGAAAACATACAAGTGA 1008 0.4286 MRAGKGNQEEDEYDEEDFGSSKKQSTSSAPNTNKDGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWGQEPSKLMPWRNSHWRVQSFTGQPTAIKNGLGTLSPFPGKFDESNVSISPTMLSGTQNTIDPDQSRDIVNKTAERQPDLVSKGIPLPLPMHANMSVPARSDGVLAHPLQGTVSDAQSTECPTTSEPQNHQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANNGLSCGTSSPKNHDNPPSNNQTIAHFRDAGSGEDSDQTQKRMKTYK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03046 335 MobiDBLite consensus disorder prediction 291 315 - -
Phco8g03046 335 MobiDBLite consensus disorder prediction 291 335 - -
Phco8g03046 335 CDD bHLH_AtBIM_like 43 119 - -
Phco8g03046 335 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 333 IPR044295 GO:0003700|GO:0006351|GO:0046983
Phco8g03046 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Phco8g03046 335 Gene3D - 42 115 IPR036638 GO:0046983
Phco8g03046 335 MobiDBLite consensus disorder prediction 318 335 - -
Phco8g03046 335 FunFam BHLH domain class transcription factor 42 114 - -
Phco8g03046 335 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Phco8g03046 335 SMART finulus 50 100 IPR011598 GO:0046983
Phco8g03046 335 MobiDBLite consensus disorder prediction 39 57 - -
Phco8g03046 335 MobiDBLite consensus disorder prediction 1 57 - -
Phco8g03046 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 116 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03046 Phco-Chr8 44768821 44773838 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g03046 HLH 1.8e-13 No_clan