Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g03018 ATGAACCACGACGACAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATTCCATGCAAGAGGCTGTTAGACACTGTGACAGTGAAGTGTGGCCACTGCAGCAACCTCTCCTTTCTGAGCACCAGACCCCCTAATTCTCAAAACCAAAGCATTGATCACACCCTCAGTCTCCAGGGGTTTTACAGTAATGCCAAAAAGGGACAAGCATCGTCTTCATCTTCCTCACCAACCACATCCAACGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCATCCGCTTACAATCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCGAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCTGCAGCGAAAAATTGGGCAAGGTTCATTCCAAATTCACCAACCAGCTCAGTTTCTGCAAGTAAAGTTAATGTGAGAATTCCTTATCCTTATATATTATTAAAGTTTAATAATTTATTCAGTCTTTTACATTTCTATTAA 582 0.4485 MNHDDKLTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDHTLSLQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSASKVNVRIPYPYILLKFNNLFSLLHFY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g03018 193 CDD HMG-box_SF 117 153 - -
Phco8g03018 193 Pfam YABBY protein 14 156 IPR006780 GO:0007275
Phco8g03018 193 FunFam Protein CRABS CLAW 89 160 - -
Phco8g03018 193 PANTHER PROTEIN YABBY 6-RELATED 14 163 IPR006780 GO:0007275
Phco8g03018 193 MobiDBLite consensus disorder prediction 83 103 - -
Phco8g03018 193 MobiDBLite consensus disorder prediction 83 112 - -
Phco8g03018 193 Gene3D High mobility group box domain 91 160 IPR036910 -
Phco8g03018 193 SUPERFAMILY HMG-box 100 154 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g03018 Phco-Chr8 44363659 44365537 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phco8g03018 YABBY 2.7e-56 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g03018 8 44363659 44365537 Phco8g03018 8 44363659 44365537 ECH