Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02972 ATGGCCTCCGGCGACGGCCATGATTCACTGCGCAAGAACCGCCGCTGCTCTGTTCCGAAAGAAGCTGACCGATCCTCGAAGCGCCACCGCCACCGCCGCCGCCATGGAAGCAGAAAACACGGCGAAGAAAGTGAACGCCATTGTGAAACCGCCGATTGCGAAACTGCTGCAGTGGCTCCTTCTCCGATTCCGCCCCGTAGCTCTGGCACGAATCGTCGCGTTCCCGATGATGACGATGTCGAGGAGGGAGAAATTCTCGAAGAAGACGATGGCGATATCACGAAACTAGACGCGCAATCTGATGCTAACCCTGTCGAAAATGGCGTGACCGGAGATCGAAATGTTCGATCCAATAACACAAATCAGGGACATTTTGTCAGGGAGACTTTGTTGCATGCTGAAGATTTAAAAACTAGAACACAGTGCACTCTTGATGATAAATTTATTGGTCCTGATGGCGAAGAAGAGGCATGCGGAAGGAGTCACTTTGGCAGTGGAATACATGAAGATGATATGAACAATGAGCTTTTGGATGGGAAGGATGATAGAACTAGTATAGATTCTATGGGCAATGGGCTTTTGGACCATAAATCTTTGGGAAGGGACATGCGGCATGGTGGGGAATATGAATGTTTTAAGGGAAATGAGAAACATAAAGGTTACTGTGATGACAAGGACTTAGAGCTTGACAGAAGGAAAGCTGGTTACTATAGAATCTCTTCCTCAGAAAGTGGAGAGAAATATCGAAAATCAAGACGGTCACGTTCTCGTGATAGATATAGAAGTCAATCAAGATCAAACGGTCGTGCTAGGGACAGGTCTCGTTCTGGTAGTATAGCAGAAAAACATGCTCATTCAAAGAAAAGGCACTCTGATGAAAAGGGGGAGCTTTCGTATGCTGGTAGACTGAAGACTGGCTACGACATTGATGATGAAAGAATGATGGCAAGCAGATGGGAGAATAGAGATTTGGTGGACGAAAGAAGGGAACCCAGAGCAAGTTATCATGTTCGGGATAGGAGTAGAGACAAAGATGTTAAGAGAGACTTAAAGATGGAAAAAGAACAAGAGAGGAGTAGGAATATGGAGGTTGATTGGGTACTTAGAAGGGAAAAAGAACTTGAAAGGAGCCATGAGAGACACAGAAGGAATGGGGAAGAAGATAGGAGGCAAAGAGAGGATGATAGGGATAGGAGAAGAGAAAAAGAAATAGATAGGAGCTGTGATACAGTGTTTGATAGGGATAGGAGAAGGGAAAAGGAAAGATATCGAAGTAGAGAGAGAACAAGGGGTGTGGAGAGAGACAGGGACCGGGAGACTGCTGATCATGACGATAGGAGTTGGGAAAGAGATAAAGTTAAGGAGAGGGAGAAGCGAGATGATAGAAGGAGGCGCACGGGTAGAGACACTTTGAATGGCATGGGTAAGTATCTGCCTTGTGAGGATGATTATGATAGTTGTGATAGGCTTAGAATGCGTTCAGAACAAGAGGAAACAGAACACCACCAACAAAGAAAAAAGAATTCCTTGCCTGTAAAGGTTCATGATGAAAACAAACTACAGAGAGGGGAGGATGAACAAGATGAGTTAGATGAAAAGATTACATTGCAATCACCTGATCAAGAAGAGGAAGATTTCAATAGGGTTAAAGAAGAGAGTAGAAGGAGAAGGGAGGCAATCTTAGAGAAATACAAGAAGCAGCTGCAACAAGTAGAACAAAATACAGAAAACAAAGTAATAGACAAACAAACTGTAGACTTTCCTCCTACCATTCCTGACATTCTCGATGATGTGGAAGTGGAAACATCATTCTTTGTCAGGATATCTCCTCAGGAAAATGGGGATGTTGCTTCTGATATGATCTCCAGTGCTGGGGGCCTTGGAGAGGGTACACCTAAGAGTGAAGGAGCTGATGACAAATTTTGTGATGATATATTTGGTGAGACGCCAACTGGAGTTCAGAAATCAGGTAAAGGAGAAGGTGTAAGAATTGAGAGGGGTGGCCTACATGACAATTGGGATGATGCAGAGGGTTATTACAGTTATCGTTTTGGTGAAGTACTTGATGGCAGGTATGAAGTCATTGCTGCTCATGGGAGAGGTGTCTTTTCAACAGTGGTCCGGGCAAAGAATCTTGAAAGTAGTAATGGTGAACCTGGAGAAGTTGCCATAAAAATAATTCGTAGTAATGACACAATGTACAAGGCTGGTATGGATGAATCGGTGATATTAAAGAAATTAGTAGGTGCTGATCCAGATGATAAGCGTCATTGTGTTCGATTCCTTTCTAGTTTCAAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTCCATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTCAGGCTAACTGCAGTTAGAGCGTATGCTAAACAACTTTTTATTGCACTTAAGCATCTCCGGAACTGCGGTGTTCTCCATTGTGATATAAAACCAGATAATATGTTGGTGAATGAAGCTAAAAATGTTTTAAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCGTATCTAGTGAGTCGCTTTTATCGTGCCCCTGAAATCATACTTGGCTTAACCTATGATCATCCATTGGATATGTGGTCTGTAGGCTGTTGTTTGTATGAGCTCTATACAGGGAAGGTTCTTTTTCCAGGTTCTACTAACAATGACATGCTACGGCTTCAGATGGAATTGAAGGGCCTTTTTCCTAAAAAGATGCTTCGGAAGGGAGCATTTATTGAACAGCATTTTGATCAGGACCTGAATTTTCTTGCTACAGAGGAGGACCCTGTGACAAAAAAGGCAATAAAGCGGATGATTCTCAACATAAAACCAAAAGATATTGGAACAATTATCACTGGCTCTCTAGGGGAGGATGCAAAGATGTTAGCCAATTTTAAGGATCTTCTCGAAAAGATTTTTGTATTGGATCCAGATAAGAGATTGACAGTCTCACAGGCATTGAATCACCCATTCATCACTGGCAAGTGA 3033 0.4289 MASGDGHDSLRKNRRCSVPKEADRSSKRHRHRRRHGSRKHGEESERHCETADCETAAVAPSPIPPRSSGTNRRVPDDDDVEEGEILEEDDGDITKLDAQSDANPVENGVTGDRNVRSNNTNQGHFVRETLLHAEDLKTRTQCTLDDKFIGPDGEEEACGRSHFGSGIHEDDMNNELLDGKDDRTSIDSMGNGLLDHKSLGRDMRHGGEYECFKGNEKHKGYCDDKDLELDRRKAGYYRISSSESGEKYRKSRRSRSRDRYRSQSRSNGRARDRSRSGSIAEKHAHSKKRHSDEKGELSYAGRLKTGYDIDDERMMASRWENRDLVDERREPRASYHVRDRSRDKDVKRDLKMEKEQERSRNMEVDWVLRREKELERSHERHRRNGEEDRRQREDDRDRRREKEIDRSCDTVFDRDRRREKERYRSRERTRGVERDRDRETADHDDRSWERDKVKEREKRDDRRRRTGRDTLNGMGKYLPCEDDYDSCDRLRMRSEQEETEHHQQRKKNSLPVKVHDENKLQRGEDEQDELDEKITLQSPDQEEEDFNRVKEESRRRREAILEKYKKQLQQVEQNTENKVIDKQTVDFPPTIPDILDDVEVETSFFVRISPQENGDVASDMISSAGGLGEGTPKSEGADDKFCDDIFGETPTGVQKSGKGEGVRIERGGLHDNWDDAEGYYSYRFGEVLDGRYEVIAAHGRGVFSTVVRAKNLESSNGEPGEVAIKIIRSNDTMYKAGMDESVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLTYDHPLDMWSVGCCLYELYTGKVLFPGSTNNDMLRLQMELKGLFPKKMLRKGAFIEQHFDQDLNFLATEEDPVTKKAIKRMILNIKPKDIGTIITGSLGEDAKMLANFKDLLEKIFVLDPDKRLTVSQALNHPFITGK 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02972 1010 SUPERFAMILY Protein kinase-like (PK-like) 679 1009 IPR011009 -
Phco8g02972 1010 Coils Coil 550 581 - -
Phco8g02972 1010 MobiDBLite consensus disorder prediction 240 403 - -
Phco8g02972 1010 SMART serkin_6 692 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02972 1010 ProSiteProfiles Protein kinase domain profile. 692 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02972 1010 FunFam Serine/threonine-protein kinase PRP4 homolog 752 1008 - -
Phco8g02972 1010 MobiDBLite consensus disorder prediction 417 554 - -
Phco8g02972 1010 MobiDBLite consensus disorder prediction 260 403 - -
Phco8g02972 1010 PANTHER DUAL SPECIFICITY PROTEIN KINASE 406 1008 - -
Phco8g02972 1010 MobiDBLite consensus disorder prediction 100 120 - -
Phco8g02972 1010 Gene3D Transferase(Phosphotransferase) domain 1 752 1008 - -
Phco8g02972 1010 Pfam Protein kinase domain 693 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02972 1010 MobiDBLite consensus disorder prediction 38 52 - -
Phco8g02972 1010 MobiDBLite consensus disorder prediction 1 24 - -
Phco8g02972 1010 Gene3D Phosphorylase Kinase; domain 1 663 751 - -
Phco8g02972 1010 MobiDBLite consensus disorder prediction 417 470 - -
Phco8g02972 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Phco8g02972 1010 MobiDBLite consensus disorder prediction 481 554 - -
Phco8g02972 1010 MobiDBLite consensus disorder prediction 1 120 - -
Phco8g02972 1010 CDD STKc_PRP4 691 1007 IPR044092 GO:0004674|GO:0006468|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02972 Phco-Chr8 43670874 43678360 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Phco8g02972 Pkinase 8.7e-47 CL0016