Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02966 ATGGAGAGAAGAGGGGATGTAGCTCTCTTTTGTTTAGCTTTGTTCTTCCTGTCTACTTCAGTGGTTGGTTTGCTTTCTCCCAAAGGTGTCAACTATGAAGTTCAAGCTTTGATGAGCATTAAGAACTCTCTGATGGATCCTCATTCTGTGTTGGGTAACTGGGATGCGGATGCTGTAGATCCTTGCAACTGGGCTATGGTCACATGTTCTTCTGATCATTTTGTCACTGCCCTTGGGATTCCAAGCCAAAATATATCTGGTCGTCTCTCACCAAGCATAGGCAGTTTAACAAACCTCCTCACTGTGCTTCTGCAGGACAATAATATTACAGGACCAATCCCCTCTGAGATTGGAAAGCTCCAAAAGCTTCAAACTCTTGATCTTTCTGACAATTTCTTCACTGGTCAACTTCCAGATTCTCTTTCCCAAATGAAGGGTCTCCATTACTTGCGGCTAAACAATAACAGTCTCACTGGACCAATTCCTTCCTCTTTAGCTAACATGACTCAACTTGCTTTTCTGGATATCTCTTATAATAACTTGAGTGAATCTGTACCAAGAATAAATGCAAAAACATTCAATATCGTAGGCAATCCTCAGATATGTGCCACTGGAGTCGAGCAGAACTGCTTCAGAACAACGCCAATTCCTTCAGCTCCAAATAATTCTCAGGATTCACGATCCACCAAAGGACCAAAGAGTCACAAAGTAGCCTTGGCGTTTGCTTCAAGCTTAAGCTGCATATGCTTACTAATTCTGGGACTTGGCTTCCTCATCTGGTGGAGACAAAGACATAACAAGCAAATATTCTTTGATGTTAATGAACAACACCGTGAAGAGGTTTTCCTTGGAAACCTCAAGAAGTTCCACTTCAGAGAACTTCAGCTTGCTACAAACAACTTCAGCAGCAAGAACTTGATTGGCAAAGGTGGTTTTGGAAATGTCTACAAAGGGTATCTCCAAGATGGTACAGTTATAGCAGTGAAAAGGCTCAAAGATGGTAACGCCATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTCCATCGGAATCTTCTTCGACTATATGGATTCTGCATGACAACTACAGAGAGGCTCTTGGTTTATCCGTACATGTCAAATGGAAGTGTCGCTTCCCGTCTGAAAGCCAAGCCAGCTTTGGACTGGCCCACGAGGAAGAGAATAGCTTTAGGAGCTGGAAGAGGCTTGCTGTATTTGCATGAACAGTGTGATCCAAAGATTATTCACAGAGATGTGAAAGCAGCAAATATCTTGCTTGATGATTATTGTGAGGCTGTGGTAGGAGATTTTGGGCTGGCAAAGCTGTTAGATCACAGGGATTCACATGTGACAACAGCAGTGAGAGGCACCGTGGGACACATAGCCCCTGAGTATCTCTCAACAGGTCAATCTTCTGAGAAAACAGATGTGTTTGGGTTTGGAATTCTTCTTCTTGAACTAATATCTGGCCAAAGGGCTCTTGAGTTTGGGAAAGCAGCAAACCAAAAAGGAGCCATGCTAGACTGGGTGAAGAAAATCCATCAAGAGAAGAAAATTGACTTGTTGGTTGACAAGGACCTGAAAAACCAATATGATAGGATTGAGCTTGATGAAATTGTGCAAGTGGCTCTTTTATGTACTCAGTACCTTCCAAGTCACAGACCCAAAATGTCTGAAGTGGTTAGGATGCTTGAAGGAGATGGTCTTGCAGAGAAATGGGAAGCCTCACAGAGAGCTGAATCAACAAGAAGTAGAGGAAATGAACTCTCCTCTTCAGAGCGCTACTCTGATCTCACTGATGATTCTTCATTACTTACACAAGCAATGGAACTTTCTGGGCCAAGATGA 1866 0.4303 MERRGDVALFCLALFFLSTSVVGLLSPKGVNYEVQALMSIKNSLMDPHSVLGNWDADAVDPCNWAMVTCSSDHFVTALGIPSQNISGRLSPSIGSLTNLLTVLLQDNNITGPIPSEIGKLQKLQTLDLSDNFFTGQLPDSLSQMKGLHYLRLNNNSLTGPIPSSLANMTQLAFLDISYNNLSESVPRINAKTFNIVGNPQICATGVEQNCFRTTPIPSAPNNSQDSRSTKGPKSHKVALAFASSLSCICLLILGLGFLIWWRQRHNKQIFFDVNEQHREEVFLGNLKKFHFRELQLATNNFSSKNLIGKGGFGNVYKGYLQDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWPTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVKKIHQEKKIDLLVDKDLKNQYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLTQAMELSGPR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02966 621 ProSiteProfiles Protein kinase domain profile. 301 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02966 621 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Phco8g02966 621 SMART serkin_6 301 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02966 621 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 212 - -
Phco8g02966 621 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Phco8g02966 621 Gene3D Transferase(Phosphotransferase) domain 1 378 590 - -
Phco8g02966 621 SUPERFAMILY Protein kinase-like (PK-like) 279 571 IPR011009 -
Phco8g02966 621 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Phco8g02966 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Phco8g02966 621 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Phco8g02966 621 Pfam Protein kinase domain 302 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02966 621 MobiDBLite consensus disorder prediction 588 615 - -
Phco8g02966 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Phco8g02966 621 FunFam Somatic embryogenesis receptor-like kinase 1 378 590 - -
Phco8g02966 621 MobiDBLite consensus disorder prediction 578 621 - -
Phco8g02966 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 581 - -
Phco8g02966 621 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Phco8g02966 621 SUPERFAMILY L domain-like 32 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02966 Phco-Chr8 43565636 43569670 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco8g02966 Pkinase 5e-43 CL0016