Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02933 ATGGTTTTGTTCTCAGAAGATGAAGGTTTGCATGATATGAACTTCTTGTGGGAAAACCATTGGTGGGATCCCTCCGATTCCGATAACTCGCGTGAAACTATAGGAAACACGAAGTCAGAAAAGCAGAAGAATGAAAAGGATGAAGGTGTGATGAAGAAGAAGAAGAAGAAGCGAAATCATCGAGAGCTGAACAAGGTTACGAGTGCAGAAGGAAAAGGTGAAAAGAGTCGTGAATCTGATCATGAAATGCATATATGGACTGAGAGAGAAAGGAGAAAAAAAATGAAAAACATGTTCACTACTCTTCATGCTTTGCTTCCCCATCTTCCTTCTAAGGCGGATAAATCAACGGTTGTGGATGAAGCAGTGAGCTACATAAAAAACCTTGAGAGAACCCTGGAAAAGCTAGAGAAACAGAAAGAAGAAAGGCTCCAATGTGGCTCCACGTTCATGACTGCTCAGGGACTTTCTTCTAATTACAACTTTTCAAACGCGATTATGGGAACTTCTTCAAACGCGCTTTTACTCCCTGCGCAGCAGCCAGTGGCTTTTCATAAAACGTGGGCCTCTTCAAACATAGTCTTGAATGTTTGTGGAGATGAGGCCCAATTCTGCATTTGCGCAGCCCATAAGCCCGGCCTCATGTCCAGCGTAGCTTTTGTGCTGGATAAATACAACATAGAGCTTCTATCTGCCCACGTTTCCTGCATTGGGAATGGAAATGCAATCATGATTCAAGCTCACGGGAAACGAGCTTCACATCAGATCCTGGATGCAAATTCAGTGGAAGAAATTTATAGGCAGGCTGCGGGAGAGATTCTGCTATGGATCGCTTAA 837 0.4349 MVLFSEDEGLHDMNFLWENHWWDPSDSDNSRETIGNTKSEKQKNEKDEGVMKKKKKKRNHRELNKVTSAEGKGEKSRESDHEMHIWTERERRKKMKNMFTTLHALLPHLPSKADKSTVVDEAVSYIKNLERTLEKLEKQKEERLQCGSTFMTAQGLSSNYNFSNAIMGTSSNALLLPAQQPVAFHKTWASSNIVLNVCGDEAQFCICAAHKPGLMSSVAFVLDKYNIELLSAHVSCIGNGNAIMIQAHGKRASHQILDANSVEEIYRQAAGEILLWIA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02933 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 129 IPR011598 GO:0046983
Phco8g02933 278 CDD bHLH_AtbHLH_like 84 137 IPR045239 -
Phco8g02933 278 Gene3D - 70 145 IPR036638 GO:0046983
Phco8g02933 278 MobiDBLite consensus disorder prediction 33 52 - -
Phco8g02933 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 142 IPR036638 GO:0046983
Phco8g02933 278 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 27 277 IPR044278 GO:0003700|GO:0006355|GO:0009960
Phco8g02933 278 MobiDBLite consensus disorder prediction 63 82 - -
Phco8g02933 278 Pfam Helix-loop-helix DNA-binding domain 84 130 IPR011598 GO:0046983
Phco8g02933 278 MobiDBLite consensus disorder prediction 23 82 - -
Phco8g02933 278 SMART finulus 87 135 IPR011598 GO:0046983
Phco8g02933 278 Coils Coil 119 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02933 Phco-Chr8 43155735 43157413 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g02933 HLH 4e-09 No_clan