Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02929 ATGGATTTCTTATTGGAAAATCATACAAGTTCTTCTAGTTCTGATCGTTCGAGTGAAATTACGAAAAACGAAACGTTATCGAAACAACAAGGTGAAATTCTTATGAATAAGACGTCGAATCAAGATATTTTTGAGAAAAATGAGAAGAAAATTGTTATTAGTGGTGAAGGGTCATACGATCTAGAAATGAATGATGAAATGCATCCATCGATCGAAAGAGGTCGACGAAAGAAAATGAAAGGAATGTTTGACGATCTTAGTGGTTTACTTCCACAACTTCCTTCAAAGGTTGATAAAGCAAGCATAGTGAATGAAGCAGTGAACTACATAAAAGTTCTGCAGGAAACCCTGGAAAAGCTAGAGAGAAAGAAACAAGAAAGGGCAGAAGATGGTCTGAAACAAATTATGGGAACAACTTCAGGTGCAGTTTCAGTCTCTGGGAAGCAGAAAGTAGCTTTTCATAAAACTTGGGCTGCTTCAAACATGGTGCTGAACATCCATGGAAATGAAGCTCAATTCTCCATTTGCACAGTCCATAAGCCAGGACTCATGACCAACATTGCTTCTGTGCTGGAGAAGCACAACATAGAACTCATTTCTGCCACCATTTCAGCCAATGGAAATGGAAGTTCATGCATGATTCAAGTCCATGGAAAACAAGGTTGGGATGAAAATTCAGTAGAGGAAACTTACAGGAAAGCTGCTGAAGAGATTATGCCATTGATCGCTTAA 732 0.3852 MDFLLENHTSSSSSDRSSEITKNETLSKQQGEILMNKTSNQDIFEKNEKKIVISGEGSYDLEMNDEMHPSIERGRRKKMKGMFDDLSGLLPQLPSKVDKASIVNEAVNYIKVLQETLEKLERKKQERAEDGLKQIMGTTSGAVSVSGKQKVAFHKTWAASNMVLNIHGNEAQFSICTVHKPGLMTNIASVLEKHNIELISATISANGNGSSCMIQVHGKQGWDENSVEETYRKAAEEIMPLIA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02929 243 CDD bHLH_AtbHLH_like 68 121 IPR045239 -
Phco8g02929 243 Gene3D - 64 135 IPR036638 GO:0046983
Phco8g02929 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 125 IPR036638 GO:0046983
Phco8g02929 243 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 10 241 IPR044278 GO:0003700|GO:0006355|GO:0009960
Phco8g02929 243 SMART finulus 69 119 IPR011598 GO:0046983
Phco8g02929 243 Pfam Helix-loop-helix DNA-binding domain 66 114 IPR011598 GO:0046983
Phco8g02929 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 113 IPR011598 GO:0046983
Phco8g02929 243 MobiDBLite consensus disorder prediction 1 29 - -
Phco8g02929 243 Coils Coil 103 130 - -
Phco8g02929 243 SUPERFAMILY ACT-like 171 233 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02929 Phco-Chr8 43126612 43134415 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g02929 HLH 3e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02929 8 43126612 43134415 Phco8g02929 8 43126612 43134415 ECH