Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02813 ATGTTATATCCCATTCTCATCTCATATAAATATACGTATATATCACATTGTGAACTCTCTCACCTTCACCCTTTGTATGTTATTCATTCTTTCTCCGCATTCTGTTTCTTCACCCAGAAAAATAAAGGGAATTTTCTTTTCTTTTTCAATCTTTTCCAACTGGAAACTCAGCTGCTGAAGGTTGGTGTTCTCGCTTATCGTCTCAGGATTGGGCTCTGCGGGGGTGATCTGTGTGCAATTCGGAGGGCTGGAAATCTTGCTTGTGTTTCGTGCCTTTGTGAATTCCCTGAGGTTAGATCTGCTTCATGCTGTTTTCTTTTGTTCGAATGTGAAAGAATGAAGAGGTCAAGGGATGATGCTTACATGAGTTCACAACACAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGATGAGTGGTGGTGGTCAGAGACTAACCACAAATGATGCCTTAGCATATCTCAAGGCTGTAAAGGATATGTTTCAAGATAAGAGAGAAAAGTATGATGACTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACCGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCACCCCAAAAGAAGCCTGTTGAATTTGCTGAAGCCATAAGTTTTGTGGGCAAGATTAAGACTCGCTTTCAAAGCAATGACAGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAGGAAACTAAGTCCATCACTGAGGTTTACGAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGACCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAGCAGCCTCTAATCTCTATGCTTCTACTCGAAATCCTCTGCTCCGTGATAGGAGCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGAAAAGAGAGAAAGGAACATTGCTTCACAAGGTGATCGTGACTTCAGTGCTGACCATCCTGATCCAGAACTTGACAGATGTTTGGTTAAGGCTGATAAGGATCAGAGGAGGCGTGATGAGAAGGAAAAAGAAAGTAGAGAAGAGAAAGACAAGAGACAACGGGAAAGGGACGACAGAGATTATGATCATGATGCTAGTAGGGAGAATTTATCTCACAAGCGGAAATCTGCTTGTAGGGCTGAAGATTCTGGTGCTGAACCGTTGCATGATACTGATGAAAATTTTGGCATGCACCCTGTCTCATATGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGATTGGTTACCTTGACAAAGTGAAGGAGAAATTACGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCTTAAACATCTACTGCAAGGAAATAATTGCTCGTCATGAATTGCAATCATTGGTGGGTAATTTACTGGGAAAATATGCAGACCTTATGGAGGGATTTGATGAATTTTTGTCTCAATGTGAGAAGAATGAAGGATTCCTTGCTGGTCTTCTGAAAAAAAAATCCTTTTGGCATGAAGGACACGGACCAAAACCAATGAAGGTAGAGGACAAGGATCGTGATAGGGATGATGGGATGAAAGAAAGGGATCGTGAATGCCGAGAACGGGAGAAATCCAATGCAACTGCTAACAAGGATGTTTCAGCTCCTAAGATGTCTCTATATGCGAGCAAAGATAAGTATGCCGGAAAACCTATAAGTGAGCTGGATCTTTCTAACTGTGAACAATGCACTCCCAGTTATCGTCTTCTTCCCAAAAATTACCTAATACCGGCAGCGAGCCAGAGAACAGAACTTGGTGCAGAGGTGTTGAATGATTACTGGGTTTCTGTTACTTCTGGTAGTGAGGACTATTCCTTTAAACACATGCGCAAAAATCAGTATGAGGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAGGAGCTCTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATTGAAAGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATTTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTACCACAAATCACTTGATCATCGTAGTTTTTACTTTAAGCAGCAGGATACAAAGAGCTTGAGTACTAAAGTCTTACTGGTAGAAATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGACGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCAATTATTCCTCACTTGGAATTTGTGTATCCTGATCCAGACATCCATGAAGATCTGTATCAACTCATAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCTGTGTTTGGAGTTCCTTCTCGATCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGATAGGAATAATTCTACCAAAAGTGGCACTGAAATTGTTGCTGGTGATGGTAGTCCTGTAATGAATCCTAAGAATTTAAACATAAATAGAAACGGGGATGAAAACTTTCTATTTGAACAATCTCATTCCTGCAAACAATGGCAACCAAGTGGACATAATAAGGTTAAAGAGGATAATCATCTTGATTTGGACTGCTTTGCACATAAGACTGAAGCCTTAGGGAGTAATACACAGCAGGGTAAAATGAGTATAAATGCATCTATACCTGATGAAGTATCAAGAGCCAATAAGCAAGATCATTCCACTGAACGGTTGGTGAATGCTAATGTCTCACTATCCTCGGCTGTGGAGCAAAATAATAGAAGAACAAATGTGGATAACGCAACAGGACTTGCTGCTAATCCATTAAGACCTGGTAATATATCTTCTGTGGGAGGAGTTGGTTTACCTTCATTAGAGGGTGCTGATTCTACGCGACCAGTTACGTCCATTAATGGGGCCGTCATTGAGGACTCTAAAGTTCACAGATATCAGGAAGAATCAGTGGGACACTTCAGAAGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACCTTGATGAGGATAACTCTGCAGATTATGGACATTCTGGTTCGGAGGCACTTCATAGAGGAAAAGATGGTAACATTTACCGACTATACCAAAACAGACATGGGGATGTAGTTCGTGCTGTAGCAGGAGGAGAAAATGAGGCTGATGATGAAGGAGAAGAAAGTCTCCGTAGATCATTGGAGGACAGCGAAAATGCTTCAGAAAATGGTGATGTTTCTGGTACAGAGTCTGGTGATGGTGAGGAGTGTTCTCGAGAACATGAGGATGGGGATCATGATCATGATAACAAGGCAGAGAGTGAAGGTGAGGCAGAAGGAATGGCTGATGCCAACGATGTTGAAGGAGATGGTGCCTCATTGCCATATTCAGAGCGCTTTCTTTTCAATGTAAAGCCTCTGGCAAAATATGTTCCTCCGACATTGCATGAGAAGGAAAGGACTGGTCGAGTCTTTTATGGAAATGACGCCTTTTATTTGCTATTTAGACTCCATCAGACATTGTATGAGAGGATACGGTCTGCAAAGGTTAACTCATCGTCTGCTGAAAGGAAGTGGAGGGCTTCAAATGATACAGACTCTACTGATCAATATGGCAGGTTTTTAAGTGCCCTTTACAATTTACTGGATGGTTCTTCGGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACATTAGATAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCGGCTGACGAGATGGATAACAAGCTGCTTCAGCTGTATGCATATGAAAAATCAAGAAAACCTGGACGATTTGTGGATTTAGTTTGTCATGAAAATGCCCGTGTTCTTCTTCATGATGAAAACATATATCGTATTGAATGTTCAGCTGCACCTACCCAATTGTCTATTCAACTGATGGACTATGGATTTGATAAACCTGAAGTGACTACTGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTATCTGTTGTCCCTGACAAAAAGGAGAAGTCAGGAATTTACCTGAAGAGGAATAAGCGCAAGAATGGCAGTAGTGATGAATTTTCAAGCCAGACCATGGATGGACTACAAATTGTCAATGGACTGGAGTGTAAGATAGCTTGCAATTCGTCTAAGGTTTCATACGTTTTAGATACTGAAGACCTTTTATATCAAACAAGAAAAAAAAGGAGGACCTTGCATCAGAGCAATTCATGCCTTGAACAATCAAAGTCCTCAATAATTTCTTCAAGCAGAGAACAACGGGTCTGCAAATTATTTTCAAATTGA 4578 0.4041 MLYPILISYKYTYISHCELSHLHPLYVIHSFSAFCFFTQKNKGNFLFFFNLFQLETQLLKVGVLAYRLRIGLCGGDLCAIRRAGNLACVSCLCEFPEVRSASCCFLLFECERMKRSRDDAYMSSQHKRPMVSSRGEPSGQPQMMSGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAISFVGKIKTRFQSNDSVYKSFLDILNMYRKETKSITEVYEEVAALFQDHADLLEEFTHFLPDTSGAASNLYASTRNPLLRDRSSAMPTVRQMHVEKRERNIASQGDRDFSADHPDPELDRCLVKADKDQRRRDEKEKESREEKDKRQRERDDRDYDHDASRENLSHKRKSACRAEDSGAEPLHDTDENFGMHPVSYACEDKSSLKSMYSPVIGYLDKVKEKLRNPEDYQEFLKCLNIYCKEIIARHELQSLVGNLLGKYADLMEGFDEFLSQCEKNEGFLAGLLKKKSFWHEGHGPKPMKVEDKDRDRDDGMKERDRECREREKSNATANKDVSAPKMSLYASKDKYAGKPISELDLSNCEQCTPSYRLLPKNYLIPAASQRTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNAFLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLVEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDPDIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPVFGVPSRSQGPEDTEDVVKDRNNSTKSGTEIVAGDGSPVMNPKNLNINRNGDENFLFEQSHSCKQWQPSGHNKVKEDNHLDLDCFAHKTEALGSNTQQGKMSINASIPDEVSRANKQDHSTERLVNANVSLSSAVEQNNRRTNVDNATGLAANPLRPGNISSVGGVGLPSLEGADSTRPVTSINGAVIEDSKVHRYQEESVGHFRSEREEGELSPNGDLDEDNSADYGHSGSEALHRGKDGNIYRLYQNRHGDVVRAVAGGENEADDEGEESLRRSLEDSENASENGDVSGTESGDGEECSREHEDGDHDHDNKAESEGEAEGMADANDVEGDGASLPYSERFLFNVKPLAKYVPPTLHEKERTGRVFYGNDAFYLLFRLHQTLYERIRSAKVNSSSAERKWRASNDTDSTDQYGRFLSALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYAYEKSRKPGRFVDLVCHENARVLLHDENIYRIECSAAPTQLSIQLMDYGFDKPEVTTVSMDPNFSAYLHNDFLSVVPDKKEKSGIYLKRNKRKNGSSDEFSSQTMDGLQIVNGLECKIACNSSKVSYVLDTEDLLYQTRKKRRTLHQSNSCLEQSKSSIISSSREQRVCKLFSN 1525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02813 1525 SUPERFAMILY PAH2 domain 450 515 IPR036600 GO:0006355
Phco8g02813 1525 FunFam Paired amphipathic helix SIN3-like protein 234 305 - -
Phco8g02813 1525 Pfam Paired amphipathic helix repeat 468 512 IPR003822 GO:0006355
Phco8g02813 1525 Pfam Paired amphipathic helix repeat 172 216 IPR003822 GO:0006355
Phco8g02813 1525 Pfam Paired amphipathic helix repeat 259 302 IPR003822 GO:0006355
Phco8g02813 1525 Gene3D Paired amphipathic helix 155 217 IPR036600 GO:0006355
Phco8g02813 1525 MobiDBLite consensus disorder prediction 1070 1085 - -
Phco8g02813 1525 MobiDBLite consensus disorder prediction 1132 1205 - -
Phco8g02813 1525 MobiDBLite consensus disorder prediction 1094 1109 - -
Phco8g02813 1525 MobiDBLite consensus disorder prediction 537 570 - -
Phco8g02813 1525 Coils Coil 670 690 - -
Phco8g02813 1525 Gene3D Paired amphipathic helix 445 517 IPR036600 GO:0006355
Phco8g02813 1525 ProSiteProfiles PAH domain profile. 446 515 IPR003822 GO:0006355
Phco8g02813 1525 Pfam C-terminal domain of Sin3a protein 1240 1486 IPR031693 -
Phco8g02813 1525 Gene3D Paired amphipathic helix 233 306 IPR036600 GO:0006355
Phco8g02813 1525 Coils Coil 367 394 - -
Phco8g02813 1525 PANTHER SIN3B-RELATED 147 1384 IPR039774 GO:0003714
Phco8g02813 1525 FunFam Paired amphipathic helix protein Sin3 155 217 - -
Phco8g02813 1525 MobiDBLite consensus disorder prediction 1167 1193 - -
Phco8g02813 1525 Pfam Sin3 family co-repressor 603 694 IPR013194 -
Phco8g02813 1525 MobiDBLite consensus disorder prediction 1132 1154 - -
Phco8g02813 1525 MobiDBLite consensus disorder prediction 333 429 - -
Phco8g02813 1525 MobiDBLite consensus disorder prediction 126 147 - -
Phco8g02813 1525 SMART hdac_interact2seq4b 601 701 IPR013194 -
Phco8g02813 1525 MobiDBLite consensus disorder prediction 320 430 - -
Phco8g02813 1525 SUPERFAMILY PAH2 domain 149 218 IPR036600 GO:0006355
Phco8g02813 1525 MobiDBLite consensus disorder prediction 877 913 - -
Phco8g02813 1525 MobiDBLite consensus disorder prediction 121 147 - -
Phco8g02813 1525 ProSiteProfiles PAH domain profile. 149 219 IPR003822 GO:0006355
Phco8g02813 1525 SUPERFAMILY PAH2 domain 231 304 IPR036600 GO:0006355
Phco8g02813 1525 MobiDBLite consensus disorder prediction 1070 1109 - -
Phco8g02813 1525 MobiDBLite consensus disorder prediction 537 573 - -
Phco8g02813 1525 FunFam Paired amphipathic helix protein SIN3 444 517 - -
Phco8g02813 1525 ProSiteProfiles PAH domain profile. 235 305 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02813 Phco-Chr8 41399323 41410467 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco8g02813 Sin3a_C 4.6e-57 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02813 8 41399323 41410467 Phco8g02813 8 41399323 41410467 ECH
Phco4g01542 4 14395087 14406033 Phco8g02813 8 41399323 41410467 PCT