Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02785 ATGGTTTACTCCTTCTATGACAAAAGCTCTTCTTCTGGCTCTGATACTTCGGGCTTGTTCAATCCCACTTTGCGAAGCCTTGGAGCTTCCAATGGTGATGTTGTGAAGGGTGGCTTGTCATCATCGCATTCTTTGGTTTTTGAGAGTGAGAAGGGAGAGCTGGTGAAGTGTTCTTCGGCTGCAAAGGTAGGGAAGAATGAGATTTGTGAGGCCAAAGCTTTGGCTGCTTTGAAGAACCATAGTGAAGCAGAGAGGAGAAGGAGGGAGAGAATAAACGGTCATCTTACAACACTACGTGGCCTTGTACCATCCACTGAAAAGATGGATAAAGCCACTTTACTGGCTGAAGTGATCAGCCAAGTGAAGGAATTGAAGAAAACTGCAGTAGAAGCAAGCAAGGGTTTTCTAATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATGTGATGGATCCAAGTCTTACAGTGCAACTATTTGCTGTGATTTCCGACCTGAAATAATATCTGACCTAAGACAAACACTTGATTCCCTTCCACTGCATCTAGAGAAGGCAGAAATTTCAACTTTGGCAGGAAGAATGAAGAATGTATTCGTCTTTACATGCTGCAAAGGGAACATTAATATTGATACTGAAGAATGCCAAGCTCTTGCAAGAACTGTTCACCAGGCACTATCTTCTGTACTGGATAAGGCTTCTGCTTCACTTGAGTTCTCACCCAGAACATCACATGCTAACAAGAGGAGAAGACTATGCTTTATTGAAACATCCACTTCCTCATGCAACCATGGATCTTGTTTGTGTTGA 807 0.43 MVYSFYDKSSSSGSDTSGLFNPTLRSLGASNGDVVKGGLSSSHSLVFESEKGELVKCSSAAKVGKNEICEAKALAALKNHSEAERRRRERINGHLTTLRGLVPSTEKMDKATLLAEVISQVKELKKTAVEASKGFLIPMDADEVKVEPCDGSKSYSATICCDFRPEIISDLRQTLDSLPLHLEKAEISTLAGRMKNVFVFTCCKGNINIDTEECQALARTVHQALSSVLDKASASLEFSPRTSHANKRRRLCFIETSTSSCNHGSCLC 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02785 268 SMART finulus 81 130 IPR011598 GO:0046983
Phco8g02785 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 127 IPR036638 GO:0046983
Phco8g02785 268 Pfam Helix-loop-helix DNA-binding domain 79 124 IPR011598 GO:0046983
Phco8g02785 268 Gene3D - 72 133 IPR036638 GO:0046983
Phco8g02785 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Phco8g02785 268 PANTHER TRANSCRIPTION FACTOR BHLH30 37 255 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02785 Phco-Chr8 41013123 41016028 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g02785 HLH 1.4e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02785 8 41013123 41016028 Phco8g02785 8 41013123 41016028 ECH