Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02735 ATGGAAGACGAAATGTACGGCATACCATCAACGGCGGAGTACTCGGAGAAAGCGTTGATGACGCCAGAGAACATATTTCCGGCTGAGTACCACGGCTTCCTAATGTCCTCCGCTAGCCGGATTCCGATGTTCGGATCCGACGAGTTGCTCTCCGCCGCCGTGGCCATCACCGCCGGCCGCAGAACTGAACCCTACCCGAGCGTCGCCATCGCACCCGAAATTCAGCGCCACCACGACACCTCTTCCCTCATCAAAGCCAAAATCGCTTCTCACCCTCACTACCCTCGCCTCCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGTTTGTTAGAGGAAATCCGACGAGAAAACGACGTTTGCAAGAGGGACGTTGTTTACACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCCGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAACAAGATCGAAACGCAGCTTACGGATCTCTGCACTGGTTCTTCTCTTCCAACCCTTTCCGATGACGGAGGTGTATCTTCTGAAGAAGGATTAAGTGCTGGCGATGGTGATTTTCAAGATGAACAATTGCATAATGAAGATAGAGAGTTGAAGGATAAACTTTTACGTAAGTTTGGAAGTCATATCGGTTCACTAAAATTAGAATTTTCAAAGAAAAAAAAGAGGGGTAAACTGCCAAAAGATGCTAGACAAATGCTACTGCAGTGGTGGAATATTCACTACAAATGGCCTTATCCTACGGAAAGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAAAAGCAAATTAACAATTGGTTCATTAATCAAAGAAAGCGTCACTGGAAGCCATCGGAGAATATGCCGTTTGCTATGGTGGATGGTCTTACCGGTCGGTTTCTTACTGATGAGTGA 972 0.4825 MEDEMYGIPSTAEYSEKALMTPENIFPAEYHGFLMSSASRIPMFGSDELLSAAVAITAGRRTEPYPSVAIAPEIQRHHDTSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDVCKRDVVYTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLTDLCTGSSLPTLSDDGGVSSEEGLSAGDGDFQDEQLHNEDRELKDKLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQMLLQWWNIHYKWPYPTESDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFAMVDGLTGRFLTDE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02735 323 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Phco8g02735 323 Pfam KNOX1 domain 84 125 IPR005540 GO:0003677|GO:0005634
Phco8g02735 323 SUPERFAMILY Homeodomain-like 241 314 IPR009057 -
Phco8g02735 323 SMART ELK_2 220 241 IPR005539 GO:0003677
Phco8g02735 323 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
Phco8g02735 323 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Phco8g02735 323 SMART KNOX2_2 132 183 IPR005541 GO:0003677|GO:0005634
Phco8g02735 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 310 - -
Phco8g02735 323 CDD homeodomain 252 304 IPR001356 GO:0003677
Phco8g02735 323 Pfam KNOX2 domain 135 182 IPR005541 GO:0003677|GO:0005634
Phco8g02735 323 SMART HOX_1 242 307 IPR001356 GO:0003677
Phco8g02735 323 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Phco8g02735 323 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Phco8g02735 323 Gene3D - 239 309 - -
Phco8g02735 323 Pfam ELK domain 220 241 IPR005539 GO:0003677
Phco8g02735 323 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02735 Phco-Chr8 40316700 40324914 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco8g02735 KNOX2 6.2e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01415 4 12338286 12346761 Phco8g02735 8 40316700 40324914 PCT