Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02734 ATGGTCCGCCAACATGAGACAGTCGGTCATACCTTATCTCTTGGCAGAGGTTGCCGCGTTAGGATAGTCATGCGGTCTTTGATGCAGGCCGGATCATGTGACCACTCAATTGTACGATTGGTTGGTGGTCCTGAATTTCTCCATTTCACTTGTTTGGGATGTTCAGGCCAAGTATCATCATCAGTACCAGAGAAAGTGATTAGATCCGATCATCACAAAAAAATGGAAAGAACAGCCCCTGTGGTCTATTTCCAATGCTTTATTTTCCTTCTCATGAAGGCTGTATTGCTATCAAAAACAGTGATGGCAGAACCAAGGGCCAAGACTGTCAATATAACATGTAGCCAGAAGTTAGAGCACAACGCCACTATCTTTGTTCCAAATTTTGTTGCAACCATGGTGAAGATTAGTGAACAGATGAGCACCACTGGTTATGGCACAGCAGTTGAAGGGACAGGAGGACCTGACACTAACTACGGGTTGGCTCAGTGCTATGGTGATCTCTCATTACTTGACTGTGTTTTATGTTATGCCGAGGCACGCACGGTTCTTCCCCAATGCTTCCCTTACAACGGTGGTCGCATATACCTTGATGGTTGCTTCATGAGGGCGGAAAACTACAGCTTCTATGATGAGTACACAGGGCCAGGAGACAAGGCTGTTTGTGGAAACACAACAAAGAACACAGGTTTTCAAGCAGCAGCAAAGAAAGCTGTTATGACTGCAGTTCAAGCTGCACCAAACAATAAAGGGTATGCTAGAGCGGAGGTTGCTGTTGCAGGAACAGCAAATGACTCAGCTTATGTTCTGGCTAATTGTTGGAGGAGCTTGGACGAAAAGTCTTGTAGAGCTTGTCTTGAGAATGCATCTTCTTCCGTATTGGGGTGCCTGCCCTGGTCAGGAGGGCGAGCACTCAACACCGGATGCTTCATGAGGTACTCAGACTCAGATTTTCTTAACAAGGAAGAGGAAAATGGAAGGTCAGGAGATAATGTATTAGTGATAGTGATTGCAGTAATCAGTTCAGCTATTGTTTTGGTGGTTGGAATAGCTATTGTGGTTTACATCCGCAAACACAGATACGTTCAAATGAAACGAAGAGGTTCACATGATGCAGAAAAGTTAGCCAAAAGCCTTCACCATAATAGCTTGAACTTCAAATACTCTACACTGGAGAAGGCTACTAATTCTTTTGATGAAGCTAACAAGCTTGGTCAAGGAGGATTTGGAGCGGTTTATAAAGGAGTTCTGCCTGATGGAAGAGAGATTGCTATTAAGAGATTATATTTCAACAACAGGCATAGAGCAGCGGATTTCTACAATGAAGTCAACATAATTAGTAGTGTGGAACACAAAAATCTAGTCAGACTCTTAGGATGCAGTTGTTCAGGACCTGAAAGCCTGCTTATATATGAGTTTCTAGCTAACAGAAGTCTTGATCGCTTTATATTTGATAAAAACAAGGGTAGAGAACTAAATTGGGCCAAGAGATATGACATTATCGTGGGGACAGCTGAAGGATTGGTTTATCTGCATGAGAACTCCAACATTAGGATAATCCACAGAGATATAAAAGCCAGCAACATCTTATTGGATGCAAAGCTTCGGGCTAAAATTGCTGATTTTGGTTTGGCCAGGTCCTTTCAAGATGATAAGAGCCACATTACTACAGCTATTGCTGGAACTTTGGGTTATATGGCTCCAGAGTACCTAGCACATGGTCAGTTAACAGAGAAAGCAGACGTATATAGCTTTGGGGTGTTACTGTTAGAAATAATTACTGGGAGACAGAATAACAGGAGCAAAGCATCAGAATATTCAGACAGCCTAATAATAATGACATGGAAGCATTTTCAATCAGGGACTGCAGAACAAATAATTGATCCACATCTATTGTTGGATGACAACCATAGAAGCAACGTTAAGAATGATATTTTAAGAGTGGTGCAGATAGGACTTCTATGCACCCAAGAAATCTCTTCCTTGCGACCATCTATGTCAAAGGCACTAAAGATGCTAACAAAGAAGGAGGAGCATGTGGAAGCACCCTCCAATCCACCCTTTATAGATGAAAGTACCATGGAACTCCATGACCAAAATGAAGATCCATTTTATCCTCTCGATGCAGCAGACTCATTGGCTACTATGTCCCATAGCTCATTTTATCCAAGGTAA 2175 0.4244 MVRQHETVGHTLSLGRGCRVRIVMRSLMQAGSCDHSIVRLVGGPEFLHFTCLGCSGQVSSSVPEKVIRSDHHKKMERTAPVVYFQCFIFLLMKAVLLSKTVMAEPRAKTVNITCSQKLEHNATIFVPNFVATMVKISEQMSTTGYGTAVEGTGGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNGGRIYLDGCFMRAENYSFYDEYTGPGDKAVCGNTTKNTGFQAAAKKAVMTAVQAAPNNKGYARAEVAVAGTANDSAYVLANCWRSLDEKSCRACLENASSSVLGCLPWSGGRALNTGCFMRYSDSDFLNKEEENGRSGDNVLVIVIAVISSAIVLVVGIAIVVYIRKHRYVQMKRRGSHDAEKLAKSLHHNSLNFKYSTLEKATNSFDEANKLGQGGFGAVYKGVLPDGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLIYEFLANRSLDRFIFDKNKGRELNWAKRYDIIVGTAEGLVYLHENSNIRIIHRDIKASNILLDAKLRAKIADFGLARSFQDDKSHITTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIITGRQNNRSKASEYSDSLIIMTWKHFQSGTAEQIIDPHLLLDDNHRSNVKNDILRVVQIGLLCTQEISSLRPSMSKALKMLTKKEEHVEAPSNPPFIDESTMELHDQNEDPFYPLDAADSLATMSHSSFYPR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02734 724 FunFam Cysteine-rich receptor-like protein kinase 3 218 318 - -
Phco8g02734 724 Pfam Salt stress response/antifungal 123 207 IPR002902 -
Phco8g02734 724 Pfam Salt stress response/antifungal 222 315 IPR002902 -
Phco8g02734 724 Gene3D Transferase(Phosphotransferase) domain 1 474 685 - -
Phco8g02734 724 Gene3D Phosphorylase Kinase; domain 1 358 473 - -
Phco8g02734 724 SUPERFAMILY Protein kinase-like (PK-like) 381 703 IPR011009 -
Phco8g02734 724 ProSiteProfiles Protein kinase domain profile. 398 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02734 724 SMART serkin_6 398 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02734 724 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 159 701 - -
Phco8g02734 724 Gene3D - 106 209 IPR038408 -
Phco8g02734 724 Gene3D - 219 318 IPR038408 -
Phco8g02734 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Phco8g02734 724 CDD STKc_IRAK 404 675 - -
Phco8g02734 724 FunFam Putative DUF26-domain receptor-like protein kinase family protein 361 473 - -
Phco8g02734 724 ProSiteProfiles Gnk2-homologous domain profile. 107 209 IPR002902 -
Phco8g02734 724 FunFam Cysteine-rich receptor-like protein kinase 2 474 681 - -
Phco8g02734 724 ProSitePatterns Protein kinases ATP-binding region signature. 404 426 IPR017441 GO:0005524
Phco8g02734 724 ProSiteProfiles Gnk2-homologous domain profile. 213 318 IPR002902 -
Phco8g02734 724 Pfam Protein tyrosine and serine/threonine kinase 401 607 IPR001245 GO:0004672|GO:0006468
Phco8g02734 724 FunFam Cysteine-rich receptor-like protein kinase 2 107 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02734 Phco-Chr8 40301551 40306308 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco8g02734 PK_Tyr_Ser-Thr 4.9e-46 CL0016