Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02689 ATGAAGAACCTGAGGGTTTGTTTCGCTTACTTGTTTCCTTCAATCATTCTGGTTCTGATTACTCCTTCCTCGGTTGCGCAGCTATCACCAAGTGAGAGTAGAATTCTATTCCAAGTTCAGAAGCTTCTTGAATATCCTCAAGCTCTTCAAGGTTGGACAAGATGGACCAACTTGTGCTTCCTCCCTCCCTCTTCTTCCCTCAAGATAGTTTGCTCAAATGGTCATGTGACAGAACTAACAATCATTGGAAACAAGACCTCCCCTTCTTCACACATCCCCAAGGCAGGTTCCTGGACTTCCCTTCAAACACTTTCAGGAAAATTCTCCATCGATTCTTTCTTCACTGTCATGACAAAGCTTTCAAATTTGAAGGTGTTGTCCTTAGTGTCCTTGGGTTTGTGGGGTCCTTTACCATCCAAAATCAACAGGCTTTTGTCTTTGGAAATGCTAAACATTAGCTCAAATTTAATTTATGGGGAAATTCCATCATCTATATCCTCAATGATGAATCTAAGGAGTCTTGTTTTGGTTAATAATCTCTTCAATGGAAGTGTCCCTGATCTCCAAAGTTTAACTTCTCTCGAAGAGCTCAACTTGGGAGGTAACAAACTGGGTCCTGAATTCCCTTCTGTGGGAAAGAATCTTGTCACTATTATCTTGAGAAGTAATTCACTGAGATCTCATATTCCTTCACAAATTGTGCACTTTGAAAAACTTCAGGTATTTGATGTCTCTTCCAATGATTTTTTTGGAAACATCCCGTCCTTTTTGATGTCTATGCCTTCCCTTCATTCCCTAAACTTGGCCGCAAACCATCTAAGTGGGAACCTCTCAGAGAATATGGCATGTAGTTCTTCACTAACATTTGTGGATATCTCACATAACCTTCTGGTTGGAAAATTGCCAGCCTGCCTTGGTTCAATGTCTTCAAAGGCCACAATACTTTATTCTGGAAATTGTTTGTCAACCAAAAGGTTAAATAATCAACAACATCCATCTTCTTTTTGCAAGAGAGAGGGAGCTTTGGCTGTTAAGCCTCCAGCTAAAAAGCTGCAGGATGAATCAAAGTCGGGTGCCAAACTAGGCCTAGTGATTGGAATAATTGGAGGAGCTGTAGTAATTGCTGGACTTCTGGTTTTTCTAATTGTGTTCATCTTTAGAAAGGCTAATGGAGAAAGATCACATCATAAAATGGACAAATCTGTTGCTAATAAATATTCCGCCAGTGCATCTCCAAGACCAAACGGTACAAGACATATTCCTCAGGCAATGAAGCAAGCTACACTTGGACTGCCACCATACCGTATTTTCACATCAGAGGAAATTGAAGATTCAACAAATAACTTTGACCCATCAAATTTAATAGAAGAGGGATCACAAGGACAGCTATATAAAGGTTGGCTCAGAGATGGTTCAGTGGTCCTAGTTAATTGTATTAAAATAAGGCAGAAAGGTCTCCCCCACAGCATCATGCAGCAAATAGAGGTATTATCCAATTTGAGGCACAGGCATATGGTGAGTGTTCTAGGACACTGTATCATTACTGAACAGGATCATCCCCTAACAACAAGCACAGTCTTCATCGTATTTGAGCACATCTCAAATGTGTCATTGAGGGATCAACTTGCAGATGGGAGGAAGAGGGAAATGCTGAAATGGCCACAAAGAATGGCAATGAGCATAGGCATTGCAAGAGGAGTCCAGTTCTTACACACAGGAGTTGCTCCTGGCATATATGGCAACAATTTAAAGATTGAGAACATTCTGTTGGATGATAGTCTCAATACAAAAGTCAGTAGATACAACATTCCATTGCCATCCAAGAGTGCACAGGATGAACACACTGCCACCAATCATATTGGCAGCACAAATCATGCAGAAAAAGAAGATATCTATCAGCTGGGTGTTATTCTTCTTGAAGTTATCACTGGCAAACAAATTGCTTCACCAAGTGAAATAGAGGAGATGAAGGATGAGCTGGAGAATGGTTCATCAGAAGCAACATCAGTTCTTAAAAGTGTAATTGATCCTTCACTGCGGGGAACTTATGCATATGAATCAATGAAGACTGCAGTTCAGATTACCATCAACTGTCTCTCCAAGGTTTCTAGCCAGCGTCCTTCAATAGAGGATGTTCTTTGGAATTTACAATACTCAATGCAAGTTCAAGAGTCATGGACCAGCAGCGGAAACCTCAGCACAAAATTCTAA 2211 0.4066 MKNLRVCFAYLFPSIILVLITPSSVAQLSPSESRILFQVQKLLEYPQALQGWTRWTNLCFLPPSSSLKIVCSNGHVTELTIIGNKTSPSSHIPKAGSWTSLQTLSGKFSIDSFFTVMTKLSNLKVLSLVSLGLWGPLPSKINRLLSLEMLNISSNLIYGEIPSSISSMMNLRSLVLVNNLFNGSVPDLQSLTSLEELNLGGNKLGPEFPSVGKNLVTIILRSNSLRSHIPSQIVHFEKLQVFDVSSNDFFGNIPSFLMSMPSLHSLNLAANHLSGNLSENMACSSSLTFVDISHNLLVGKLPACLGSMSSKATILYSGNCLSTKRLNNQQHPSSFCKREGALAVKPPAKKLQDESKSGAKLGLVIGIIGGAVVIAGLLVFLIVFIFRKANGERSHHKMDKSVANKYSASASPRPNGTRHIPQAMKQATLGLPPYRIFTSEEIEDSTNNFDPSNLIEEGSQGQLYKGWLRDGSVVLVNCIKIRQKGLPHSIMQQIEVLSNLRHRHMVSVLGHCIITEQDHPLTTSTVFIVFEHISNVSLRDQLADGRKREMLKWPQRMAMSIGIARGVQFLHTGVAPGIYGNNLKIENILLDDSLNTKVSRYNIPLPSKSAQDEHTATNHIGSTNHAEKEDIYQLGVILLEVITGKQIASPSEIEEMKDELENGSSEATSVLKSVIDPSLRGTYAYESMKTAVQITINCLSKVSSQRPSIEDVLWNLQYSMQVQESWTSSGNLSTKF 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02689 736 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 422 522 - -
Phco8g02689 736 ProSiteProfiles Protein kinase domain profile. 449 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02689 736 SUPERFAMILY Protein kinase-like (PK-like) 429 716 IPR011009 -
Phco8g02689 736 Gene3D Phosphorylase Kinase; domain 1 415 521 - -
Phco8g02689 736 Gene3D Ribonuclease Inhibitor 29 212 IPR032675 -
Phco8g02689 736 Pfam Protein kinase domain 455 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02689 736 MobiDBLite consensus disorder prediction 397 418 - -
Phco8g02689 736 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 29 211 - -
Phco8g02689 736 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 533 732 - -
Phco8g02689 736 Gene3D Transferase(Phosphotransferase) domain 1 533 731 - -
Phco8g02689 736 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 213 717 - -
Phco8g02689 736 SUPERFAMILY L domain-like 29 322 - -
Phco8g02689 736 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 212 301 - -
Phco8g02689 736 Gene3D Ribonuclease Inhibitor 213 343 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02689 Phco-Chr8 39569924 39573016 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Phco8g02689 Pkinase 1.1e-16 CL0016