Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02682 ATGAAGATGAGAGTGTCTCATAATGGTGCACCCACTTACCTTGTACCTTCAACAGTAGGGTATGAACAGAGAAGAGGAAAAAAAGAGGAAAGTGGGAGGGAAAGTTGGGTGAAGGGGATAATGGGTAACTGCCTACGTTCTTCAGCTAAAGTAGAATCAGCTCACAGTTCCAGAACCCCTTCTGGAATTTCAAAGACCAGTCCTTCATCTGTTCCTTCGAACTTATCTATTCAGTCATACTGTGAAGCAAGTGATGTCTCAAGTCTTCCCACTCCAAGGTCCGAGGGTGAAATTTTGTCTTCCCCAAATCTTAAGGCCTTTGCCTTTAATGAGCTAAGGAATGCCACCAGAAACTTTCGCCCCGACAGTCTTCTTGGGGAAGGAGGATTTGGTTATGTTTACAAGGGGTGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTAGTTGCTGTTAAGAAACTCAAGCCGGAAGGGTTACAAGGTCATAAGGAGTGGTTGACTGAAGTTGACTACCTTGGGCAACTTCACCATCAGAATCTGGTTAAATTGATTGGATACTGCGTGGAGGGAGAGAACCGGCTGTTGGTCTATGAGTTCATGTCCAAAGGGAGCTTAGAGAATCATCTATTTAGAAGAGGACCACAGCCTCTATCTTGGTCAGTGAGAATGAAAGTGGCTATTGGTGCTGCCAGAGGGCTCTCTTTTCTTCATAATGCCCAGTCTCAAGTCATATACCGTGATTTTAAAGCATCTAATATCCTACTTGACGCGGATTTCAATCCTAAGCTCTCTGATTTTGGCTTAGCAAAGGCTGGCCCTACGGGTGATAGAACTCATGTCTCTACTCAAGTTATGGGAACTCAAGGATATGCAGCACCTGAATATGTTGCAACAGGTCGGCTGACAGCTAAAAGTGATGTATACAGCTTTGGTGTTGTGTTGCTTGAGCTATTGTCTGGTAGACGTGCCGTTGACAGAACAAAAGCTGGTGTGGAGCAGAATCTAGTAGAGTGGACAAAACCATATTTGGGTGACAAAAGAAAACTGTTTCGGATTATGGACACCAAGTTGGGAGGCCAATACCCACAAAAAGGAGCCTACACGGCTGCCACTCTTGCACTACAATGCCTAAATCGCGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGAAACTCTTGAACAGATTGCAGCCTCAAAAACTGCAGGGAGAAACTCCCAATCAGAACAAAAGAGAGTCCATGCTCCTGTAAGAAAGTCTAAAGTGAAAACGGGTGCCCTTTGA 1302 0.4485 MKMRVSHNGAPTYLVPSTVGYEQRRGKKEESGRESWVKGIMGNCLRSSAKVESAHSSRTPSGISKTSPSSVPSNLSIQSYCEASDVSSLPTPRSEGEILSSPNLKAFAFNELRNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCVEGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAQSQVIYRDFKASNILLDADFNPKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGVEQNLVEWTKPYLGDKRKLFRIMDTKLGGQYPQKGAYTAATLALQCLNREAKARPPMTEVLETLEQIAASKTAGRNSQSEQKRVHAPVRKSKVKTGAL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02682 433 SUPERFAMILY Protein kinase-like (PK-like) 93 399 IPR011009 -
Phco8g02682 433 ProSiteProfiles Protein kinase domain profile. 119 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02682 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Phco8g02682 433 FunFam Probable serine/threonine-protein kinase PBL8 205 419 - -
Phco8g02682 433 FunFam Serine/threonine-protein kinase BIK1 86 204 - -
Phco8g02682 433 CDD STKc_IRAK 125 402 - -
Phco8g02682 433 Pfam Protein tyrosine and serine/threonine kinase 123 399 IPR001245 GO:0004672|GO:0006468
Phco8g02682 433 Gene3D Transferase(Phosphotransferase) domain 1 205 428 - -
Phco8g02682 433 MobiDBLite consensus disorder prediction 49 72 - -
Phco8g02682 433 Gene3D Phosphorylase Kinase; domain 1 95 204 - -
Phco8g02682 433 MobiDBLite consensus disorder prediction 48 72 - -
Phco8g02682 433 PANTHER OS01G0588500 PROTEIN-RELATED 66 403 - -
Phco8g02682 433 MobiDBLite consensus disorder prediction 406 433 - -
Phco8g02682 433 ProSitePatterns Protein kinases ATP-binding region signature. 125 158 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02682 Phco-Chr8 39437426 39442087 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco8g02682 PK_Tyr_Ser-Thr 8.9e-47 CL0016