Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02680 ATGATGCCGCAAGATATGAAGCAGCACCATAATGAAGAGTCCACGAAGAAGGAGCACGGTGAAGAATCTAAAAAGAAGGAGCACGGTGAAGAATCTAAAAAGAAGGAGCACAACGAGGAATCTAAAAAGAAGGAGCGACACATTGTGACTTGGACTCAAGAGGAAGATGATATACTAAGGGAGAGGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCTAAGTTTAAAGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACGTACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCAGCTGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGGACGGATAATGCTGTGAAAAACCGTTTCTCCACACTCTGCAGAAAGAAAGAAAAATATGCGGCATTAGCAAAAGAGAACAGCACTTCATACATCAATTCAAATAACAAGAGAATTATGTTTGAACATTATAATAATATGGATACAACAGCTGAATCTGGAGTACCTATTAAAAAGATGAGGAGGGCCCATATCCCTGATGATGCAGAAAAGATCAAATTTGGGGACCGATCACATTTAGGAAATGGAGCTCCAATAAATCAACAGCAAAGAGCACCATTTGCAGTATTAGCTCAAAACTCCAATAATTCAAACAGCTTGCCAGAGCAGCAGCATGTTTGCAATCCCAAGCTTAATTCCGCCCAAGATAACCAGATTCAAGGAACATTTCTCAAAAGGGATGACCCAAAGAGAAGTGTATTGATGGAACAGGCTGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATACTGAAAACATGGACCAAAGTCTTGAACACACTTGGAAGGTTCTTCAAGAGTTTCTGAACCTAAACAAAGAATCAGATATTCCTGGTCACAAGATTCCAGATTTACGGCTTGTAGATAAATATATCACTAAGGACTTGAAAAGCAGTAATGAGGAAGGCCAGGCTTGTTGGAGGCAAGTGGAACAGTACGACTCTCCAGGCAGTTCTGGATACAGTACAGAATCAACTTTCCTTTGTCAGTCAGCCGGTGATAATTCCGAGCACCCATTGCATCAGGATATTGGAACTGAAATGAAGTCTGAACAACTTGGAGATGAAAAAGGAGTAGGCAGAGATGTGAAAAGGGTTCTTTGTACTGCAAATGTGGATCAAGATATGATGCCATATTGTGAGGAACAGATAAACAATGACGGGATTGTTTCTATCTCATCAAGATTGGAGTTCAGCTCCCCTATTCAAGTAACCCCTCTGTTCAGATCCTTGGCAGCAGGAATTCCCAGCCCACAATTTTCCGAAAGTGAAAGGAACTTCTTAAGGAAAACACTAGGAGTGGAATCTCCATCCATCAACCCAAGTGCCAACTCATCACAACCGCCACCCTGCAAAAGAGCCCTACTACCAAGTCTATAA 1491 0.4105 MMPQDMKQHHNEESTKKEHGEESKKKEHGEESKKKEHNEESKKKERHIVTWTQEEDDILRERIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKEKYAALAKENSTSYINSNNKRIMFEHYNNMDTTAESGVPIKKMRRAHIPDDAEKIKFGDRSHLGNGAPINQQQRAPFAVLAQNSNNSNSLPEQQHVCNPKLNSAQDNQIQGTFLKRDDPKRSVLMEQAELLSSLALKVDTENMDQSLEHTWKVLQEFLNLNKESDIPGHKIPDLRLVDKYITKDLKSSNEEGQACWRQVEQYDSPGSSGYSTESTFLCQSAGDNSEHPLHQDIGTEMKSEQLGDEKGVGRDVKRVLCTANVDQDMMPYCEEQINNDGIVSISSRLEFSSPIQVTPLFRSLAAGIPSPQFSESERNFLRKTLGVESPSINPSANSSQPPPCKRALLPSL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02680 496 PANTHER MYB PROTEIN-RELATED 50 230 - -
Phco8g02680 496 Pfam Myb-like DNA-binding domain 51 111 - -
Phco8g02680 496 SMART sant 99 147 IPR001005 -
Phco8g02680 496 SMART sant 47 96 IPR001005 -
Phco8g02680 496 MobiDBLite consensus disorder prediction 1 47 - -
Phco8g02680 496 MobiDBLite consensus disorder prediction 473 488 - -
Phco8g02680 496 FunFam Transcription factor MYB124 43 99 - -
Phco8g02680 496 SUPERFAMILY Homeodomain-like 47 141 IPR009057 -
Phco8g02680 496 CDD SANT 50 94 IPR001005 -
Phco8g02680 496 CDD SANT 103 144 IPR001005 -
Phco8g02680 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Phco8g02680 496 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Phco8g02680 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 94 IPR017930 -
Phco8g02680 496 Gene3D - 38 99 - -
Phco8g02680 496 MobiDBLite consensus disorder prediction 473 496 - -
Phco8g02680 496 Gene3D - 102 174 - -
Phco8g02680 496 ProSiteProfiles Myb-like domain profile. 51 94 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02680 Phco-Chr8 39412120 39416980 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco8g02680 Myb_DNA-bind_6 6.7e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02680 8 39412120 39416980 Phco8g02680 8 39412120 39416980 ECH