LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco8g02646	ATGACTAAGGAAAGAGACCTTCCTTCACAATCCAAGGAATATAACTACAAATCTTTTAGGACAATAGAAGATAAAGCAAGGAGAAGTAACCTTCGGTGTGAAGGCGGAGATGCTACAGACGTTGGTGCTAAGAGCGACGGCGGTTCTAAGAGCTACGGTGAGACGGTTGCGCTGGTCCTCAGCCTTACGACGGTGGGCCTGATGCTAGGGAGCGATGGCACTGCCATGCCTGGTGAGATGCTTAATGGAGGTTCAAGCATGACGCTTCTACTCCAGAAAGAAAGGCTTCCATGCTCCCCTGAGCTTATCCAAACCTCTTGGGTTTCTGAACCTTCTTACCAAGGCTCAAAATCCTTGGTTAATGTTGTGAATGTGAGGAATAGGCCCTTCTTCCGAGGGGTTGAGAAAGAAGAAAACGGTGATGATGAAGATTTTGATGTATTCCCCCGTCAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTCGAGGTCGAAAACAAGCTTGAACCCGAAAGGAAAGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGACAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGATTCAAGACCAAACAGCTGGAAAAAGACTATGGCATGTTGAAAGCTGGATATGACATTCTCAGAAGGGACTATGACAATCTCGTTCAAGAAAATGACAAGTTGAAGGAAGAGGTTTATTCTCTCATGAAGGTGATTCCCAGAGAGAAAGAGGAACAGAATTTGGATGATACCAGCTGTGATGCTGTCAACTCAGAGCATAAAGAGCAGAAGGATTTGATCATATATAGAGGTTCTGAAAATGGATCCAAATTGGCACTTCCTGTTATGGTAGTAAGCAAACAGACAGATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCGGAGAGCCCACATCTCACTGATGGAAACCAATCCTCACTCTTTGAGCCTGCAGATTCCTCTCATGCTTTGGAACCAGACCACTCGAATTTCTCACAAGAAGAGGAAGACATCCTCAGCCAAAACATCTTGACCATGCCATTCCTACCAATGTTTGAAGTTGAATATGTCTGCTATGATGAACCACCTGAAAATCCTTGCATGTTCCGCTTCCCAGTTGAAGATCAAACCTTCTGTTTTTGGTAA	1179	0.4461	MTKERDLPSQSKEYNYKSFRTIEDKARRSNLRCEGGDATDVGAKSDGGSKSYGETVALVLSLTTVGLMLGSDGTAMPGEMLNGGSSMTLLLQKERLPCSPELIQTSWVSEPSYQGSKSLVNVVNVRNRPFFRGVEKEENGDDEDFDVFPRQPGKKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKAGYDILRRDYDNLVQENDKLKEEVYSLMKVIPREKEEQNLDDTSCDAVNSEHKEQKDLIIYRGSENGSKLALPVMVVSKQTDANSAKSDVLDSESPHLTDGNQSSLFEPADSSHALEPDHSNFSQEEEDILSQNILTMPFLPMFEVEYVCYDEPPENPCMFRFPVEDQTFCFW	392

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco8g02646	392	CDD	homeodomain	152	210	IPR001356	GO:0003677
	Phco8g02646	392	Pfam	Homeobox associated leucine zipper	209	247	IPR003106	GO:0006355\|GO:0043565
	Phco8g02646	392	Pfam	Homeodomain	154	207	IPR001356	GO:0003677
	Phco8g02646	392	MobiDBLite	consensus disorder prediction	27	47	-	-
	Phco8g02646	392	FunFam	homeobox-leucine zipper protein ATHB-6-like	157	203	-	-
	Phco8g02646	392	Coils	Coil	222	249	-	-
	Phco8g02646	392	PRINTS	Lambda-repressor HTH signature	189	205	IPR000047	GO:0003677
	Phco8g02646	392	PRINTS	Lambda-repressor HTH signature	180	189	IPR000047	GO:0003677
	Phco8g02646	392	SMART	HOX_1	151	213	IPR001356	GO:0003677
	Phco8g02646	392	Gene3D	-	149	214	-	-
	Phco8g02646	392	ProSitePatterns	'Homeobox' domain signature.	184	207	IPR017970	GO:0000981\|GO:0006355
	Phco8g02646	392	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	142	297	IPR045224	GO:0003700
	Phco8g02646	392	MobiDBLite	consensus disorder prediction	304	329	-	-
	Phco8g02646	392	MobiDBLite	consensus disorder prediction	304	346	-	-
	Phco8g02646	392	SUPERFAMILY	Homeodomain-like	143	211	IPR009057	-
	Phco8g02646	392	ProSiteProfiles	'Homeobox' domain profile.	149	209	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco8g02646	Phco-Chr8	38645210	38648351	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Phco8g02646		Homeodomain	1e-15	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco8g02646	8	38645210	38648351	Phco8g02646	8	38645210	38648351	ECH
	Phco4g01709	4	18391750	18393347	Phco8g02646	8	38645210	38648351	PCT