Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02626 ATGGATCCGGGTGCGATGATGAACGAGGGTTCCTTTGCGAATAATGGGAGCGGCAATACGGCGCCGTATAGCTTGGCGGAGATCTGGCAGTTTCCGCAAGCGATTAATGGCGGCGGGGGATTGGGTCTCCGAAGCCCGCAGTTCGGACATGGGCCGGGGCAGTTTGGGGATTTCGCTCCCGGGCCCAACAATGGGCTTGGGCCCAGTAACACCAGAAAGCGGCGAGACTCCGAGGACGATTCTGCTAAGGCCGTGTCCACCAGCAATGCCGTGAATGAGGGTGATGGGAAACGTGTTAAAGCAACGGGGAATGGTGATGGTAAAGGTGAAGGAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCAAAGCCTCCTTCGGAAGCTCCCAAGCAAGATTACATTCACGTCCGAGCCAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCAGAACGAGCTCGAAGGGAAAAGATTAGTGAGAGGATGAAAATTCTTCAAGATTTGGTCCCTGGTTGTAATAAGGTTATCGGGAAAGCGTTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCGAGACTGAACTCCGGTATCGAAGCCTTTCCTCCTAAGGATTTTGGCCAGCATGCATTTGATCCCGCGGGCATACCGTTCGGTTCACAAGCTCCAAGAGAGTATAGCAGAGGTTCTTCACCTGAATGGTTACATATGCAGGTAGGAGGTGGTTTTGAAAGAACAACGTAG 795 0.5132 MDPGAMMNEGSFANNGSGNTAPYSLAEIWQFPQAINGGGGLGLRSPQFGHGPGQFGDFAPGPNNGLGPSNTRKRRDSEDDSAKAVSTSNAVNEGDGKRVKATGNGDGKGEGEVSSGKPAEQSAKPPSEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGQHAFDPAGIPFGSQAPREYSRGSSPEWLHMQVGGGFERTT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02626 264 MobiDBLite consensus disorder prediction 1 21 - -
Phco8g02626 264 CDD bHLH_AtBPE_like 133 218 - -
Phco8g02626 264 MobiDBLite consensus disorder prediction 34 132 - -
Phco8g02626 264 FunFam Basic helix-loop-helix transcription factor 140 212 - -
Phco8g02626 264 Gene3D - 140 216 IPR036638 GO:0046983
Phco8g02626 264 Pfam Helix-loop-helix DNA-binding domain 147 194 IPR011598 GO:0046983
Phco8g02626 264 Coils Coil 190 210 - -
Phco8g02626 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 193 IPR011598 GO:0046983
Phco8g02626 264 SMART finulus 149 199 IPR011598 GO:0046983
Phco8g02626 264 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 74 234 IPR024097 GO:0006355
Phco8g02626 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 210 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02626 Phco-Chr8 38248483 38250241 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco8g02626 HLH 2.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01558 4 14650191 14653213 Phco8g02626 8 38248483 38250241 PCT