Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02613 ATGTGTGCGGCGGAGAAGGACGGAATCATGCTCTTCGGCGTGCGCCTCTCCATACCCGATAACAACCCCACCTCCCTCAGAAAGAGTGCCAGCATGAACAATCTTTCCCCATACTCTGAATCGCCACCGCCGCACCATCGCAATGCGGGCTACGCCTCTGACGACGTCGTTTATCTCTGCCGTCGCACGCGCAAGCCAGGGGTTCCGTGGACGGAGGAGGAGCACAGGGAGTTCCTGTTGGGATTAGAGAACGTTGGGAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAGACTCGAACGCCCACTCAGGTCGCTAGTCACGCTCAAAAATATTTTCTCCGTCGTCACACTCACCATCTCCGCCGCCGGAGATCTAGTCTCTTCGACATCACCACCGACTCGGTGAAGGAAGATGAACAAACGGGGCCGTCAGCTAGGTTGAAACCGGTTTTGCCGGCACCTCCGTCTTCGAAAATGGCTGAGTTGGAGTTGAACAGGCGGTCGGTCTGGCTGAAGCTGAGGCTGCCGGAGCCGGAGGAGCCATCGGCGGCGACTTCTGAGGTTGTGTCTAATGGGAATTTGAGCGGTGACGGGGACATGATTAGTGTTGCTTGA 621 0.5604 MCAAEKDGIMLFGVRLSIPDNNPTSLRKSASMNNLSPYSESPPPHHRNAGYASDDVVYLCRRTRKPGVPWTEEEHREFLLGLENVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHTHHLRRRRSSLFDITTDSVKEDEQTGPSARLKPVLPAPPSSKMAELELNRRSVWLKLRLPEPEEPSAATSEVVSNGNLSGDGDMISVA 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02613 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 118 IPR017930 -
Phco8g02613 206 MobiDBLite consensus disorder prediction 25 41 - -
Phco8g02613 206 FunFam transcription factor MYB1R1 68 119 - -
Phco8g02613 206 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Phco8g02613 206 ProSiteProfiles SANT domain profile. 70 118 IPR017884 -
Phco8g02613 206 MobiDBLite consensus disorder prediction 136 159 - -
Phco8g02613 206 SUPERFAMILY Homeodomain-like 63 117 IPR009057 -
Phco8g02613 206 Gene3D - 68 119 - -
Phco8g02613 206 MobiDBLite consensus disorder prediction 25 50 - -
Phco8g02613 206 NCBIfam myb-like DNA-binding domain, SHAQKYF class 65 116 IPR006447 GO:0003677
Phco8g02613 206 MobiDBLite consensus disorder prediction 178 206 - -
Phco8g02613 206 CDD SANT 69 114 IPR001005 -
Phco8g02613 206 PANTHER TRANSCRIPTION FACTOR KUA1 5 150 - -
Phco8g02613 206 SMART sant 66 116 IPR001005 -
Phco8g02613 206 ProSiteProfiles Myb-like domain profile. 62 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02613 Phco-Chr8 38027734 38028536 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco8g02613 Myb_DNA-binding 6.1e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01550 4 14558484 14559873 Phco8g02613 8 38027734 38028536 PCT