Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02610 ATGTCTTCTTCCAATAAACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATTCCCACAACCAATGGCAGCATGAAAACAACTCTTCTGTCCTGTCCACCGGATGCCAAAGAAGCCCTTATACTTCAGGAAGTGAAGAGAGAACTCCAGAACCAAAGTCAAGATGGAACCCAAAACCCGAGCAAATTCGCATTCTAGAAGCCATCTTCAATTCTGGGATGGTGAATCCCCCAAGAGATGAGATAAGGAAGATCCGGGTGCAGTTGCAGGAGTATGGCCAAGTTGGTGATGCCAATGTGTTCTACTGGTTCCAGAATCGCAAATCCAGGAGCAAGCACAAGCTCCGCCACATCCAAAACTCAAAGAACCAGAACACAGAAACGCAACCAAACTCAGTTTCTCTCTCTCAAATCACACCACCTTCAACCTCATCCTCTTCCTCTGACAAATCCTCCTCAAAAGAACTAGTGCACCCAAATGGGTTCTCCTTTGGCTTCTCAAATGTCAATGATGCAGTGCCTAATTCTCCCACTGCTTCTGTGAATCAGACTTATTTTCAGTCTCACAATAACACCGATTTGCTACCACCAGCAATTGAGTCTTTATACTTTCCTTTGCACCATAATGGTCAAGGTCTAATAGTTAATAACACCATCACAACGCATGGGTTTTCTGTCCCTCAGTTCTCCAACAATATCATGCAATCTCAACCACAGTGTCAACCAAATGTTGGACCTAGCAGTACTCTTTTTCTCAACGAGATCATGAACCATGGAACCTTCTCAAAGAGAGACCAAGATCAGGAAAAGGCATTAAAATTAATGCACCGTCAACAACTTAGCTTCCCTCTCACTTCATCTTCAACCACAACCCTTGTTCCCTCCATCTCAACTCTTCCATGTCCAATCACCCAACTTCAAGGTGTTGGTGGTGAGGTTACGGCAGATAGAGGAAAATGTGTAGTTTTCATTAACGATGTTGCATTTGAGGTTATGAAAGGACCCTTCAACGTGCGCCAAGCCTTTGGAGACGAAGCTGTGCTTATCCACTCTTCCGGCCCTGTCCCCACCGACGACTGGGGCATTACCCTCCACCCACTGCAGCATGGTGCTTACTATTATCTGGTGTGCACTTTTCTTGAACACTGCAATTTTTTTTTCAAAGCTCCATGTTAA 1176 0.449 MSSSNKHWPSMFKSKPCNSHNQWQHENNSSVLSTGCQRSPYTSGSEERTPEPKSRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQNSKNQNTETQPNSVSLSQITPPSTSSSSSDKSSSKELVHPNGFSFGFSNVNDAVPNSPTASVNQTYFQSHNNTDLLPPAIESLYFPLHHNGQGLIVNNTITTHGFSVPQFSNNIMQSQPQCQPNVGPSSTLFLNEIMNHGTFSKRDQDQEKALKLMHRQQLSFPLTSSSTTTLVPSISTLPCPITQLQGVGGEVTADRGKCVVFINDVAFEVMKGPFNVRQAFGDEAVLIHSSGPVPTDDWGITLHPLQHGAYYYLVCTFLEHCNFFFKAPC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02610 391 FunFam WUSCHEL-related homeobox 11 53 120 - -
Phco8g02610 391 MobiDBLite consensus disorder prediction 1 47 - -
Phco8g02610 391 CDD homeodomain 52 114 IPR001356 GO:0003677
Phco8g02610 391 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Phco8g02610 391 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 376 IPR044557 GO:0003700|GO:0050793
Phco8g02610 391 MobiDBLite consensus disorder prediction 121 155 - -
Phco8g02610 391 SMART HOX_1 51 118 IPR001356 GO:0003677
Phco8g02610 391 SUPERFAMILY Homeodomain-like 46 117 IPR009057 -
Phco8g02610 391 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Phco8g02610 391 MobiDBLite consensus disorder prediction 1 60 - -
Phco8g02610 391 Gene3D - 53 119 - -
Phco8g02610 391 MobiDBLite consensus disorder prediction 113 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02610 Phco-Chr8 37935852 37937741 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Phco8g02610 Homeodomain 2.9e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02610 8 37935852 37937741 Phco8g02610 8 37935852 37937741 ECH