Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02586 ATGAATCACTCCACATCAAATAATGTGAAAAAAGCGTCTTCTTTGGCGCACGCACTCACACTGTTTCCGTTCCAACCAATCTCAGTCTCTCAAAGAGTTCCTTCACAAACCTATTTACTCAATTCAATGGCATTTTCTGCTTCGACACACAAATCTGCCGGACTTCATCCAGGGGCAATCAATGATGATTTATACAAGGAGTTGTGGCATGCCTGTGCTGGTCCCCTTGTCACTCTCCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAGGCATCAATGTATGAGGGATTGGAGCAGCAGATGCCTTCCTTCAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAATCCGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAATTAGATCAAAGTGAGGTGACCAGCCCTGATGATCCTCTGACTGAATCTCCAAGGGTCAAGATCCATTCATTTTGCAAGACACTTACTGCTTCTGATACCAGTACCCATGGGGGTTTCTCTGTTCTTCGAAGACATGCGGATGATTGTCTACCTCCATTGGATATGTCACAGCAACCACCATGGCAAGAACTGGTTGCAACTGATTTACATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAAGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCCTTTATATTCTTAAGGGATGAAAATGGAGAGCTGCGAGTTGGGGTTAGGAGGGTGATGAGACAGCAGAGCAATGTGCCTTCTTCTGTTATATCTAGTCACAGTATGCATTTAGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGTGTCAACAAGTATCTGGAAGCTAAGAGTCATAAACTCTCTGTTGGGATGAGATTTAAAATGAGATTTGAAGGTGATGAAATTCCCGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCATCAGTGTGGCTTGAGTCGGAATGGCGATCATTAAAGGTGCAATGGGACGAACCATTGTCAATTTTGCGCCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACATGTTTCAACCACTCCTGCAAACCCACAGCCAACACAAAGAAACAAGAGGGCACGGCCTCTTATTCTACCTTCTACAATGCCTGATTCATCTTTGCAAGGCATGTGGAAATCTCCAGTTGAATCTACATCTTTCTCTTATTGTGATCCTCAACATGGACGTGGCCTCTATCCATCACCCAAGTTCAATCCTTCTGCAACTAATTTTCTTGGTTTTAGTGGGAATGGGTTTGTGGGACCTCCTTCCAACAAATCAATATATTGGTCTAATAGGATGGAAAATTTCTTGGAATCAATGTCAGCTACAGTCCCTAAAGAAGCTGGAGAGAATAGACAAGATACTGGAAATGGCTGCAGACTCTTTGGGATCCAACTACTTGAGAATTCTAATGCAGAAGAATGTCTACAAACAGTCACTTTGTCTGGAAGGCTGGGTGATGATAGGTTTGTTCCATCTTTAGATGCTGAATCTGATATGCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGTCACCCCAGGAGTTGCAAAGCAGACAAATAAGGAGCTGTACGAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTAACACAATTTCATGGATACGAAGATCTGCTCAGAAAATTGGAGGAAATGTTTGATATCAAGGCTGAGCTGTGTGGGTCCATAAAAAAATGGCAGGTTGTCTACACTGATAATGAAGATGATACGATGATGGTTGGGGACGACCCATGGGATGAGTTCTGTAATGTTGTGAGGAAAATTTTCATCTACACGGCAGAGGAGGTGAAGAAGCTTTCCCCGAAAATAGGACTTTCAATAAATGAAAATAGGACTTGGAATCCCGAGGAGCAGTCGTCTAATGTGGGACCCAGTTGCTAG 2091 0.4342 MNHSTSNNVKKASSLAHALTLFPFQPISVSQRVPSQTYLLNSMAFSASTHKSAGLHPGAINDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMYEGLEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPELDQSEVTSPDDPLTESPRVKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLVAGDAFIFLRDENGELRVGVRRVMRQQSNVPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAKSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSSVWLESEWRSLKVQWDEPLSILRPDRVSSWELEPHVSTTPANPQPTQRNKRARPLILPSTMPDSSLQGMWKSPVESTSFSYCDPQHGRGLYPSPKFNPSATNFLGFSGNGFVGPPSNKSIYWSNRMENFLESMSATVPKEAGENRQDTGNGCRLFGIQLLENSNAEECLQTVTLSGRLGDDRFVPSLDAESDMPSVSCDAEKSCLSPQELQSRQIRSCTKVHMQGMAVGRAVDLTQFHGYEDLLRKLEEMFDIKAELCGSIKKWQVVYTDNEDDTMMVGDDPWDEFCNVVRKIFIYTAEEVKKLSPKIGLSINENRTWNPEEQSSNVGPSC 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02586 696 CDD B3_DNA 167 269 IPR003340 GO:0003677
Phco8g02586 696 Pfam AUX/IAA family 628 671 IPR033389 -
Phco8g02586 696 Pfam AUX/IAA family 580 618 IPR033389 -
Phco8g02586 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 63 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco8g02586 696 SMART B3_2 169 271 IPR003340 GO:0003677
Phco8g02586 696 Gene3D - 166 271 IPR015300 -
Phco8g02586 696 FunFam Auxin response factor 576 670 - -
Phco8g02586 696 FunFam Auxin response factor 167 271 - -
Phco8g02586 696 FunFam Auxin response factor 332 404 - -
Phco8g02586 696 Pfam B3 DNA binding domain 169 269 IPR003340 GO:0003677
Phco8g02586 696 Gene3D - 332 405 - -
Phco8g02586 696 SUPERFAMILY CAD & PB1 domains 584 658 - -
Phco8g02586 696 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Phco8g02586 696 Gene3D - 576 670 - -
Phco8g02586 696 SUPERFAMILY DNA-binding pseudobarrel domain 160 298 IPR015300 -
Phco8g02586 696 Pfam Auxin response factor 295 377 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco8g02586 696 ProSiteProfiles PB1 domain profile. 581 674 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02586 Phco-Chr8 37279433 37289526 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco8g02586 AUX_IAA 9.1e-12 CL0072