Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02554 ATGAATGAGTCCTTTTGTCACCATCGCTTTGGACTTTGGACACTAGCTGCCTTTTGTCCCTCTTTTCGACTTTCTGCCCGCATCACTGTAAACTATCTCCTTCCATCTCTGAATCTTCTCCCAAATCCTTCAAAAGAGAAAATGGGTTGTCATGGCAGCAAGGAGAAAAAATCAAACGCAGAATTCAGCAGTGCCTATGGATCAGGCACTCATAGTGGCAGTGGTGGTCACAATATTGTTCAACAACCACCTACCACCACTGTTGCACAGGTTCAAACATCAGCACCACCCAAACCACAACCACATTCAGAGGTGGTAGCGAGTTCACCAAAACCGAAACTTTCTCCGACCCAGAATGCCAGGGCGGTGCAGAAACCCGACGCCACGATTCTTGGGAAACCCTTTCAGGATATAAAGAAGTACTACAGTCTGGGGAAGGAACTGGGAAGAGGGCAATTCGGGATAACGTATCTGTGCACGGAGAATGCGAGCGGAATGACTTACGCTTGCAAGTCGATTCTGAAGAGGAAGCTGGTGTCGAGGGCGGATAGGGAGGACATGAAGAGGGAGATTCAGATCATGCAGCATTTGTCTGGGCAGAACAACATTGTGGAGTTCAAGGGGGCGTACGAGGACAGGATGTCGGTCCACCTTGTAATGGAACTCTGCGCCGGTGGGGAGCTCTTCGACCGGATAATCGCCCAAGGCCACTACTCCGAGAGAGCCGCCGCCTCACTCTGCCGCGCCATTGTCAACGTTGTTCACATTTGCCACTTCATGGGAGTCTTGCACCGGGATCTCAAGCCCGAAAATTTCCTGCTCTCTACTAAGGATGACGATGCTACGCTCAAGGCTACTGATTTTGGACTCTCTGTCTTCATTGAAGAAGGGAAGGTATATCATGATATGGTTGGCAGTGCTTACTATGTTGCACCCGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCGTCATATTGTATATTCTTCTCAGTGGTGTACCACCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAACGCCATATTGGAAGGTGAACTTGATTTTGTAAGTGAACCATGGCCATCCATATCAGACAGCGCTAAAGATCTAGTAAGGAAGATGCTGACACAAGATCCAAAGAAGCGGATTACTTCTGCGCAAGTCCTTGAACACCCATGGATGAGAGAAGGCGGAGAGGCATCCGATAAACCAATTGATAGTGCAGTTCTATCCAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAGGTTATTGCTGAAAATCTGTCAGAAGAGGAGATTAAAGGTCTGAAAGCAATGTTTGCAAATATGGACACTGACAACAGTGGCACAATTACCTACGAAGAATTGAAGACTGGCTTGGCTAGAATTGGATCAAGATTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCTGCTGATGTTGATGGAAATGGGTCAATTGACTATCTTGAATTCATTTCGGCTACAATGCATAGGCATAGACTTGAACGTGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGGTACATTACTAGAGATGAATTGGAGACTGCTATGACCCAACATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATATCTGAGGTGGATACAGATAATGATGGAAGAATAAACTATGAGGAATTTTGTGCAATGATGAGAAGTGGAATGCCACAACCGGGAGGGACAACCACTTTAAATCCACTGATTGGTTGA 1794 0.4548 MNESFCHHRFGLWTLAAFCPSFRLSARITVNYLLPSLNLLPNPSKEKMGCHGSKEKKSNAEFSSAYGSGTHSGSGGHNIVQQPPTTTVAQVQTSAPPKPQPHSEVVASSPKPKLSPTQNARAVQKPDATILGKPFQDIKKYYSLGKELGRGQFGITYLCTENASGMTYACKSILKRKLVSRADREDMKREIQIMQHLSGQNNIVEFKGAYEDRMSVHLVMELCAGGELFDRIIAQGHYSERAAASLCRAIVNVVHICHFMGVLHRDLKPENFLLSTKDDDATLKATDFGLSVFIEEGKVYHDMVGSAYYVAPEVLRRSYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFNAILEGELDFVSEPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSRLSEAEVKQLMDAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPQPGGTTTLNPLIG 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02554 597 SUPERFAMILY EF-hand 439 579 IPR011992 -
Phco8g02554 597 ProSitePatterns EF-hand calcium-binding domain. 563 575 IPR018247 -
Phco8g02554 597 MobiDBLite consensus disorder prediction 110 124 - -
Phco8g02554 597 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Phco8g02554 597 PANTHER SERINE/THREONINE-PROTEIN KINASE 136 575 - -
Phco8g02554 597 FunFam calcium-dependent protein kinase 1 228 407 - -
Phco8g02554 597 Gene3D Phosphorylase Kinase; domain 1 144 227 - -
Phco8g02554 597 MobiDBLite consensus disorder prediction 62 99 - -
Phco8g02554 597 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Phco8g02554 597 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Phco8g02554 597 ProSiteProfiles EF-hand calcium-binding domain profile. 551 585 IPR002048 GO:0005509
Phco8g02554 597 CDD EFh 522 580 IPR002048 GO:0005509
Phco8g02554 597 FunFam Calcium-dependent protein kinase 1 144 227 - -
Phco8g02554 597 ProSiteProfiles EF-hand calcium-binding domain profile. 515 550 IPR002048 GO:0005509
Phco8g02554 597 ProSitePatterns Protein kinases ATP-binding region signature. 148 175 IPR017441 GO:0005524
Phco8g02554 597 FunFam Calcium-dependent protein kinase 1 408 583 - -
Phco8g02554 597 Pfam Protein kinase domain 142 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02554 597 ProSiteProfiles Protein kinase domain profile. 142 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02554 597 Gene3D Transferase(Phosphotransferase) domain 1 228 407 - -
Phco8g02554 597 Pfam EF-hand domain pair 518 580 IPR002048 GO:0005509
Phco8g02554 597 Pfam EF-hand domain pair 448 508 IPR002048 GO:0005509
Phco8g02554 597 ProSitePatterns EF-hand calcium-binding domain. 528 540 IPR018247 -
Phco8g02554 597 SMART serkin_6 142 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02554 597 SUPERFAMILY Protein kinase-like (PK-like) 140 408 IPR011009 -
Phco8g02554 597 Gene3D - 408 581 - -
Phco8g02554 597 SMART efh_1 483 511 IPR002048 GO:0005509
Phco8g02554 597 SMART efh_1 554 582 IPR002048 GO:0005509
Phco8g02554 597 SMART efh_1 447 475 IPR002048 GO:0005509
Phco8g02554 597 SMART efh_1 519 547 IPR002048 GO:0005509
Phco8g02554 597 MobiDBLite consensus disorder prediction 62 128 - -
Phco8g02554 597 CDD STKc_CAMK 142 399 - -
Phco8g02554 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Phco8g02554 597 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02554 Phco-Chr8 36428707 36434536 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco8g02554 Pkinase 3.7e-71 CL0016