Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02498 ATGAAGTTTGTTGTCCCAAATAAAGAACAGCCAAAAACTCCGCAAACTGAGGATAAGCCCAAGTTGTCCAGATGCTCAAAAGTTTACGAAACTTCGAAGAGAAAAGCTGAAAAAATCCCTGAGCATGGTCATAAGAAGAATTGTGCTGTAAGGGTGACTGAAAAGAAGCGAGAGGTTCGAGAAATCAATAAGTTTAATAATATAAAACCAAAGTTAGAAGCGAGAGAGGATTTGTGTTCACTGAGGACAACAAAACTACCATGCTGGAGAAGAGATGAGAAACAAAAGCTTACTGTCTCAAACAAGAAAAGGAAATATAAAGATGATCTCTTGAATGATGATTTAGAAGATGAAGAAATGCGCATTCTGTTAAGGGCAAAGACCAGGAGCAGATCTAGAAGAATGAATAATGTGAAGAATGTTGAACAAAAGCCCCGAAATTGTCATCAATGCATGAAAAAGGGTAGAACACTTTTTGTGCCTTGTACTAAATGCCCGAACATGTACTGTATGCAGTGTGTTGATAAATGGTACCCTGATATGAAAATAGAAGAAATTGCTGTAAGTTGTCCGTTTTGCCGGAAAAACTGCAATTGCAATGTTTGCTTGTGCTCAAGAGGAATGATTAAGACATCTAACAGGGACATTACTGATTATGAAAAGGCTCAGTATCTGCATTATATGATTAACTTACTCCTACCATTTTTGAAACAAATTTGTCATGAACAAAATCAAGAGGAGCAGATTGAAGCTAAAATACTAGGGAAGCATTCTTTTGAGAAGGAAATACCTCAAAGTCTTTGTGGCAACGATGAACGTGTCTATTGTGATCACTGTGCTACTTCAATTATTGACCTTCATAGAACCTGCCCCAGTTGTTCCTATGAACTCTGCCTTAGTTGTTGCCAAGAAATACGTGATGGAAGCATTACACCCCAGGTCGAGCAGAAGTTCTCATATGTGAATAGGGGCTATGATTATATGCATGGTGGAGACCCTCTACCTGTGTCTAATGATTTCGGAACATCAGAATGTAATACCAAGCTATCTAATGTGTGGAATGCTAAGAGTGATGGAAGCATCCGATGTGCACCAAAGGAGTTCGGCGGTTGTGGTAGTGCTGCATTGGAGCTGAGACGTGTCCTACCAAGTGGGTGGATATCTGAATTGGAAATCAGAACTCGCAGTATGCTGAAAATTTGGGAAAATGTAAACACTACTCTTCAGCATAAAAAAGCAGTATCAAGCTACACCTCTTTGAGAAAGGAAGCTATTAAAGTAGACATAAATGATGATAATATGTACTGTTCAGAGTCAAGTAACATTCAAAAGGGAGGATTGTTACTTTTCCAAAAGCATTGGGCTAATGGCGAACCAATTATAGTTCGTGACGCCCTTAAACAGGGCACCGGTCTGAGCTGGAAGCCGATGGTAATGTGGCGAGCATTATGCGAAAATAGGGTTTCAGAGGTCGGTTCAAAAATGTCAGAAGTGAAAGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATCGATACTCACACATTTTTTAAAGGTTATATAGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCCCGCCATTGTGATGAGTTTATTCGCTCCTTGCCATTCCAAGAGTACAGCGATCCTCGGAGCGGAATTCTCAATCTTGCTGCGAAGTTGCCAGCACATGTCCTAAAACCTGACATGGGTCCGAAAACATATATTGCCTATGGGATTAAAGAAGAGCTTGGTAGAGGAGACTCCGTAACAAAGCTTCACTGTGACATGTCAGATGCGGTCAATATTTTGACCCATACAGCAGAGGTGATGTTAACTGATGAGCAGCACTTAATTATTTCAAAGTTGAAAGAAGCACACAAGGTACAAGATGAGAGAGAGCAGTGTGCTCAAGAAAGGGTTTCCGACAGCCTGAATGGCCGACCTTTCAAACACAACAAAGTACGGACAGAAAATGAGGTAGTTTTAGAATCCAAAGACATAGAGAAGCGCCCTATTGAAATTAATGGAAGGATCTTTCCAAATGATGTACATGAAGGGGTCACGTCTGCTACAGACAATGAATCAATGGAAACAGGCAGTGCTCTATGGGATATCTTTCGTAGAGAAGATTCTGAGAAGTTAGAAACATATCTTAGGAAGCACTCAAGAGAATTTAGACATACTTATTGTTCTCCCGTTGAACAGGTTGCACATCCAATTCATGACCAATGTTTTTATTTGACATCGGAGCACAAGAAGAAGCTGAAGGAGGAGTTCGACGTAGAACCGTGGACTTTTGAGCAAAAACTTGGGGAGGCGGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCGGTAGACTTTGTGTCTCCAGAAAATATCCATCAGTGTCTGCGTTTAACTAATGAGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCCATTGATGAAGCTGTCACAGACCTAAAAGCTTTGCTGAACTTTTCTTGA 2613 0.4072 MKFVVPNKEQPKTPQTEDKPKLSRCSKVYETSKRKAEKIPEHGHKKNCAVRVTEKKREVREINKFNNIKPKLEAREDLCSLRTTKLPCWRRDEKQKLTVSNKKRKYKDDLLNDDLEDEEMRILLRAKTRSRSRRMNNVKNVEQKPRNCHQCMKKGRTLFVPCTKCPNMYCMQCVDKWYPDMKIEEIAVSCPFCRKNCNCNVCLCSRGMIKTSNRDITDYEKAQYLHYMINLLLPFLKQICHEQNQEEQIEAKILGKHSFEKEIPQSLCGNDERVYCDHCATSIIDLHRTCPSCSYELCLSCCQEIRDGSITPQVEQKFSYVNRGYDYMHGGDPLPVSNDFGTSECNTKLSNVWNAKSDGSIRCAPKEFGGCGSAALELRRVLPSGWISELEIRTRSMLKIWENVNTTLQHKKAVSSYTSLRKEAIKVDINDDNMYCSESSNIQKGGLLLFQKHWANGEPIIVRDALKQGTGLSWKPMVMWRALCENRVSEVGSKMSEVKAIDCLANCEVEIDTHTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRSGILNLAAKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHLIISKLKEAHKVQDEREQCAQERVSDSLNGRPFKHNKVRTENEVVLESKDIEKRPIEINGRIFPNDVHEGVTSATDNESMETGSALWDIFRREDSEKLETYLRKHSREFRHTYCSPVEQVAHPIHDQCFYLTSEHKKKLKEEFDVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHQCLRLTNEFRQLPKNHKAREDKLEIKKMIVYAIDEAVTDLKALLNFS 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02498 870 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 23 866 IPR045109 GO:0032454|GO:0033169
Phco8g02498 870 Pfam JmjC domain, hydroxylase 712 816 IPR003347 -
Phco8g02498 870 SMART cupin_9 549 833 IPR003347 -
Phco8g02498 870 ProSiteProfiles Zinc finger RING-type profile. 148 194 IPR001841 -
Phco8g02498 870 CDD cupin_RmlC-like 757 817 - -
Phco8g02498 870 MobiDBLite consensus disorder prediction 1 23 - -
Phco8g02498 870 Gene3D Cupin 429 842 - -
Phco8g02498 870 ProSiteProfiles JmjC domain profile. 568 833 IPR003347 -
Phco8g02498 870 SUPERFAMILY Clavaminate synthase-like 449 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02498 Phco-Chr8 28940659 28944961 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco8g02498 JmjC 1e-15 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02498 8 28940659 28944961 Phco8g02498 8 28940659 28944961 ECH
Phco8g02498 8 28940659 28944961 Phco11g00843 11 6167689 6171811 PCT