Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02492 ATGGATGGGGCGTGTGATAGGATGGGAGCAATTAAATGGGGGAGAAAGAGAAAGAGTGTGAAGAAAAGCAGAAGTATTTACTTGTTGGCTCTCCCTCGATTTGATCGTTCCTCTCTCTCTCTCTCTTCTGTAGAAGTGAGATTTGAGAAAGAATTGCGCTGTTTCTTTCTCTCTCCTGCTTTTCTTTGCCAGTGGTGCAGTGCAGGAAACGAGGGGGAGAGTTTCATTGGGAAGGAGGCAGTGGAGGGTGGTTCTAACGAGGCCTCCAGTGTGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGTCATCATCCATTAAATCCTAATCTTAATAATCCTAATCGTAATCTTAATGAAAACACAAACACAAATACTCTCTTCCTTCCCATGCCTACTACTACTACTACTACTACTAATAATCACCACCCAAACCGCAATAGCATCCACGACAATAACCACAACACCAACAACTCTGAGTTAGGGTATTACATGGAGATCCACAACCGCAACACGAACAACAACAACGATGGAAGTTCCTCTTCTTCTTCCGCTGTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCGCCACCTGAAGTGGTGGCAAGGCTAGAAGAAGCATGTGCATCTGCTGCAGTGACTATGGCAGGTGGAACTGCTAGAATCGGTGAGGATCCGGCGCTGGACCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCACCAAACCCTTCAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTTACCATTTCTTCTTCCGACACTGCAGGTTGTAATGAAGGTGGTGATAGGAATGGATCATCTGAAGATATTGATGTACACAACAACATGATAGATCCACAGGCAGAGGACCAAGAACTGAAAGGTCAACTCTTGCGTAAGTACCGTGGATACCTAGGTAGTTTGAAGCAGGAATTCACGAAGAAGAGAAAAAAGGGCAAGTTGCCGAAAGAAGCAAGGCAACAATTACTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCACTTGCAGAGTCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTTGATCCCAGCCATCCACACTACTACATGGAAAATGTTGTGGGCAATCCCTTTCCCGATCTCTCTCACACAATGCTCTAA 1359 0.457 MDGACDRMGAIKWGRKRKSVKKSRSIYLLALPRFDRSSLSLSSVEVRFEKELRCFFLSPAFLCQWCSAGNEGESFIGKEAVEGGSNEASSVMGFGENTSSSGVCPMMMMPLVTSHHGGHHPLNPNLNNPNRNLNENTNTNTLFLPMPTTTTTTTNNHHPNRNSIHDNNHNTNNSELGYYMEIHNRNTNNNNDGSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTAGCNEGGDRNGSSEDIDVHNNMIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPFPDLSHTML 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02492 452 CDD homeodomain 367 419 IPR001356 GO:0003677
Phco8g02492 452 SMART KNOX1_2 199 243 IPR005540 GO:0003677|GO:0005634
Phco8g02492 452 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 160 424 - -
Phco8g02492 452 SMART KNOX2_2 248 299 IPR005541 GO:0003677|GO:0005634
Phco8g02492 452 Gene3D - 360 422 - -
Phco8g02492 452 Pfam Homeobox KN domain 375 414 IPR008422 GO:0003677|GO:0006355
Phco8g02492 452 ProSitePatterns 'Homeobox' domain signature. 393 416 IPR017970 GO:0000981|GO:0006355
Phco8g02492 452 Pfam ELK domain 335 355 IPR005539 GO:0003677
Phco8g02492 452 Pfam KNOX2 domain 252 298 IPR005541 GO:0003677|GO:0005634
Phco8g02492 452 Pfam KNOX1 domain 200 239 IPR005540 GO:0003677|GO:0005634
Phco8g02492 452 SMART HOX_1 357 422 IPR001356 GO:0003677
Phco8g02492 452 ProSiteProfiles 'Homeobox' domain profile. 355 418 IPR001356 GO:0003677
Phco8g02492 452 ProSiteProfiles ELK domain profile. 335 355 IPR005539 GO:0003677
Phco8g02492 452 FunFam Homeobox protein knotted-1-like 2 360 422 - -
Phco8g02492 452 SMART ELK_2 335 356 IPR005539 GO:0003677
Phco8g02492 452 SUPERFAMILY Homeodomain-like 357 433 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02492 Phco-Chr8 28861783 28867246 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco8g02492 KNOX2 6.8e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02492 8 28861783 28867246 Phco11g00850 11 6224607 6230054 PCT