Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02484 ATGCACTTTGCTAGAGCTTCAATGGGAGGCTCATGTTTTCATGCGCTTCGTTTGAGGAGGTTCAAGAGTAAGCCTCTGCCAGAACCCTCTTCGTCTTCCAAGACCCGGTTGGATTCTGACTTGGAGAACATGGAGAGAAGAAGGTTTGACAGCTTGGAATCATGGTCCATGATATTGGACTCTGAGAATGTGGAGACATGGGAAGCATCAAAGGAGGATCAAGAAGAATGGACTGCTGACCTTTCCCAACTTTTCATAGGTAACAAGTTTGCTTCTGGTGCTCACAGTCGGATTTACCGTGGAATTTACAAGCAGAGAGCTGTTGCTGTGAAAATGGTCAGGATTCCCACACAGGACGAGGAGAGAAGAACCTTGCTCGAACAGCAATTCAAGTCAGAAGTTGCTTTACTTTCTCGTCTCTTTCACCCTAACATAGTGCAGTTTATTGCAGCTTGTAAAAAACCGCCGGTGTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGAAAGAACCTTACTCTCTTTCGACAGAAACCATACTAAGGTTAGCCCTTGACATATCAAGGGGTATGGAGTACCTTCATTCGCAAGGTGTGATCCACAGAGACCTCAAGTCAAATAACTTGCTTCTCAACGATGAGATGAGGGTTAAGGTGGCAGACTTTGGAACATCGTGTCTCGAAACACGGTGTCGGGAGACCAAGGGAAACATGGGAACATATCGTTGGATGGCCCCTGAGATGATTAAGGAAAAACCTTACACTCGTAAAGTTGACGTTTACAGTTTTGGAATTGTGCTCTGGGAACTCACTACTGCTCTACTTCCCTTCCAGGGAATGACCCCTGTTCAAGCTGCTTTTGCTGTTGCTGAGAAGAACGAAAGGCCTCCACTGCCTGCTAGTTGCCAACCAGCACTTGCCCATCTGATAAAGCGTTGTTGGTCAGCAAACCCTTCAAAGAGGCCAGATTTCAGTGACATTGTGTGCACTCTGGAGAAGTACGATGAGTGTGTGAAGGAGGGTCTTCCTCTGACTCATCATTCAGGCCTTGTCAGCAAAAACATCATCATTGAACGCTTAAAAGGTTGCGTCTCTATGAGCTCTTCCATACCTGTACAGGCTTGA 1146 0.459 MHFARASMGGSCFHALRLRRFKSKPLPEPSSSSKTRLDSDLENMERRRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEERRTLLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECVKEGLPLTHHSGLVSKNIIIERLKGCVSMSSSIPVQA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02484 381 SMART serkin_6 84 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02484 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Phco8g02484 381 PRINTS Tyrosine kinase catalytic domain signature 162 175 IPR001245 GO:0004672|GO:0006468
Phco8g02484 381 PRINTS Tyrosine kinase catalytic domain signature 246 256 IPR001245 GO:0004672|GO:0006468
Phco8g02484 381 PRINTS Tyrosine kinase catalytic domain signature 200 218 IPR001245 GO:0004672|GO:0006468
Phco8g02484 381 PRINTS Tyrosine kinase catalytic domain signature 309 331 IPR001245 GO:0004672|GO:0006468
Phco8g02484 381 PRINTS Tyrosine kinase catalytic domain signature 265 287 IPR001245 GO:0004672|GO:0006468
Phco8g02484 381 Gene3D Transferase(Phosphotransferase) domain 1 167 354 - -
Phco8g02484 381 SUPERFAMILY Protein kinase-like (PK-like) 62 338 IPR011009 -
Phco8g02484 381 CDD STKc_MAP3K-like 91 335 - -
Phco8g02484 381 FunFam Serine/threonine-protein kinase isoform 1 74 166 - -
Phco8g02484 381 Gene3D Phosphorylase Kinase; domain 1 73 166 - -
Phco8g02484 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 77 340 - -
Phco8g02484 381 ProSiteProfiles Protein kinase domain profile. 84 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02484 381 FunFam serine/threonine-protein kinase HT1 167 360 - -
Phco8g02484 381 Pfam Protein tyrosine and serine/threonine kinase 86 337 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02484 Phco-Chr8 28673393 28676450 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Phco8g02484 PK_Tyr_Ser-Thr 3.5e-67 CL0016