Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02451 ATGCAAACGTCTCAGAAACACCCAAGTTCGGTTGGTGTACACTTCTATCACCACCAGCCTGTGCGAGGCATTTATCAAGTGTTGAAAAGCGATCTATGCCATGATGCCCGTGATAGCAGCAGCCAGGGAACTAGCGTTTCTTTTGAAACCTGCAAGGAGCAGTACTTTACTCTGGAATCATGCCCTGCACCCACTACTGGTTTCTTGGAATGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGAGTCCATTTTCTCCACAAGGTTCTCAGTCATGCTATTCAGATCACCACCCTTCCTCTGACAACACCTATGGATCGCCAATAAGCGGTTTGTCTAGCGTTGATGATGGGCATGAACTGAAGCACAAACTTAGAGAACTGGAGATTTCATTGTTGGGGCCTGAGGAATTAGACATTGTAGACAGTTTTGGCTGCTCCGTCGAGGGTAGCATACTCTACGGAGAATCTCAGTTGGCTAAACATAACTGGGATCACATTGCTGAAAATATTTCACGATTTGACCTGAAAGGAGTCCTCAGGTTATGTGCACAGGCCGTGTCTGATGATGATATTCCAACAGCAAGAGGGTGGATGGATAATGTATTGGGAAAAATGGTATCAGTCTCTGGAGATCCGATTCAGAGGTTGGGTGCTTACTTGTTGGAGGGGCTTAGAGCAAGGTTGGAATCATCCGGGGATCGCATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCAAAGAACTAATGAGTTACATGCACATCCTGTACCAGATTTGCCCATACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATCATAGAAGCTATGGCTAATGAGTCCAGGATTCATATAATGGATTTCCAAATAGCGCAGGGCACACAGTGGTATTTACTTATCCAGGCTCTTGCACATAGGCCTGGGGGACCCCCTTCCCTTCGCGTAACCGGTGTTGATGATTCGCAGTCGTTTCATGCTCGAGGTGGAGGACTTGAGATTGTAGGAGAAAGGTTGTCAGAATTTGCCAGGTCTTGTGGAGTTCCGTTTGAATTCCACAGTGCTGCAATGTCTGGCTGTGAGGTTGTGCGCGGAAATGTTGAAATTCGACCCGGGGAAGTTCTGGCTGTAAATTTTCCATTTGTTTTGCACCACTTGGCAGATGAGAGTGTGAGCACCGAGAATCACAGAGATAGATTGTTGAGGTTGGTTAAGAGCTTGTCTCCCAAGGTTGTTACCCTTGTCGAGCAAGAATCCAACACCAACACATCTCCTTTCTTTTCCAGGTTTCTTGAGACCCTGGATTATTACACTGCCATGTTTGAATCCATAGATGTGGCTTGCCCCAGAGATGATAAGAAGCGGATTAGTGCAGAGCAGCACTGTGTGGCACGAGACATTGTTAACATGATAGCTTGTGAGGGGGTTGAGAGGGTGGAGAGGCATGAACTTTTGGGAAAGTGGAGGTCAAGACTTTCCATGGCTGGATTTAAACAGTGCCAATTGAGTTCTTCGGTGATGGTTGCTACCCAAAATCTCCTAAACGACTTCAGTCAAAATTATAGGCTTGAACATAGAGATGATGCCCTTTATCTGGCTTGGATGAACAGACATATGGCCACTTCTTCTGCTTGGAGGTGA 1650 0.4594 MQTSQKHPSSVGVHFYHHQPVRGIYQVLKSDLCHDARDSSSQGTSVSFETCKEQYFTLESCPAPTTGFLECDDSPSYASVSSKRSPFSPQGSQSCYSDHHPSSDNTYGSPISGLSSVDDGHELKHKLRELEISLLGPEELDIVDSFGCSVEGSILYGESQLAKHNWDHIAENISRFDLKGVLRLCAQAVSDDDIPTARGWMDNVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGDRIYKSLKCEQPTSKELMSYMHILYQICPYWKFAYISANAVIIEAMANESRIHIMDFQIAQGTQWYLLIQALAHRPGGPPSLRVTGVDDSQSFHARGGGLEIVGERLSEFARSCGVPFEFHSAAMSGCEVVRGNVEIRPGEVLAVNFPFVLHHLADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFSRFLETLDYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMIACEGVERVERHELLGKWRSRLSMAGFKQCQLSSSVMVATQNLLNDFSQNYRLEHRDDALYLAWMNRHMATSSAWR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02451 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 537 IPR005202 -
Phco8g02451 549 Pfam GRAS domain family 181 549 IPR005202 -
Phco8g02451 549 MobiDBLite consensus disorder prediction 80 114 - -
Phco8g02451 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Phco8g02451 549 MobiDBLite consensus disorder prediction 80 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02451 Phco-Chr8 27989188 27990837 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco8g02451 GRAS 1.8e-123 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g02451 8 27989188 27990837 Phco11g00894 11 6644351 6646012 PCT