Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02426 ATGGCTACCGCAAGCTCCCCAACACCACCTCTGCTGCATCGTATATCAGAATACAAGGATCTGTCTCCTTCCCACCCAAGACAAGGCCATGGTGTGTTGGACGGACAAATATATCTACATGCATCTTGCAGTTCCAATCCAACCATAAATATTTTTGAACAAGCCCTAAGTTCTGTAACTTTTCAAGGCCCTTCTTTCCGTGAAAAAGAGGACCGTTTATTTGAATCCTCTGTCCTCTTTAATATTAATCTTATGACTTCAGAGCTGTTTTTTGTCCTTTTCCCCATATTCCTCTTCTCAAGAAAGCACAACTTGAAGCTCTCAAGGTTGAAGCTGTCAGTGTCAGACATGAACAACATGAACATGAGGCAGGCAGCAGGAGACAACAACCACACAGCAGATGAGAGCAACGAATGCACCGTGAGGGAGCAAGACCGTTTCATGCCAATTGCAAATGTGATCAGGATCATGCGAAAGATTCTTCCTCCACATGCCAAGATCTCAGATGATGCCAAAGAAACAATTCAAGAGTGTGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAACGAGCGTTGCCAGAGGGAACAACGCAAGACCATAACTGCTGAGGACGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGATTACATGGAGCCACTGACCATGTACCTTCACAGGTATCGTGAGCTTGAGGGTGACCGAACCTCCATGAGAGGTGAATCACTGGGGAAGAGGACCATTGAATACGCCCCTATGGGTGTTGGCGTTGCTACTGCTTTTGTGCCACCACAGTTTCACCCAAATGGATACTATGGTGCTGCCATGGGAACTTACGTTGCGCCACCAAATGCTGCGTCCTCTCATCACCATGGAATGCCAAATACTGAACCGAATGCTCGCTCCATGTGA 918 0.4695 MATASSPTPPLLHRISEYKDLSPSHPRQGHGVLDGQIYLHASCSSNPTINIFEQALSSVTFQGPSFREKEDRLFESSVLFNINLMTSELFFVLFPIFLFSRKHNLKLSRLKLSVSDMNNMNMRQAAGDNNHTADESNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGESLGKRTIEYAPMGVGVATAFVPPQFHPNGYYGAAMGTYVAPPNAASSHHHGMPNTEPNARSM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02426 305 FunFam Nuclear transcription factor Y subunit B-6 136 252 - -
Phco8g02426 305 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 125 275 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco8g02426 305 SUPERFAMILY Histone-fold 144 242 IPR009072 GO:0046982
Phco8g02426 305 Gene3D Histone, subunit A 133 252 IPR009072 GO:0046982
Phco8g02426 305 ProSitePatterns NF-YB/HAP3 subunit signature. 178 194 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco8g02426 305 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 147 211 IPR003958 -
Phco8g02426 305 PRINTS CCAAT-binding transcription factor subunit A signature 175 193 - -
Phco8g02426 305 PRINTS CCAAT-binding transcription factor subunit A signature 213 231 - -
Phco8g02426 305 PRINTS CCAAT-binding transcription factor subunit A signature 194 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02426 Phco-Chr8 27198544 27200578 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco8g02426 CBFD_NFYB_HMF 1.1e-25 CL0012