Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02389 ATGAGTGAAAGAATATTAGTAGTTCTGCTGCTTGCTTTGAATTGTTTGTTGGTTGCAAAAGGAGAAACAGCTGATGAGGATTTTACCACACTTAGGTCTCTTATAAGTACCTGGAAGAACACCCCTCCTAATTGGGTGGTTTCAGATCCTTGTGATGATTGGGAAGGAATCAAGTGCAAGAAGACACGTGTTACATCAATAACACTATCAAGTTTTGGTTTGGGTGGTCCGCTTTCGGGAGATATTGGATCACTGTCTGAATTGGAGATTTTGGATCTATCTTACAACAAGGACTTTACTGGACCACTTCCACAATCCATCGGGGAGTTGAGGAAGCTGTCAACCTTAATTCTTGTTGGTTGTAACTTCAATGGTCCTATTCCAGACAGCATAGGAAATCTGCAGGAGCTCCTCTTCTTGTCTTTAAATTCCAATAGCTTTAGTGGACCAATTCCACCTTCTATTGGTAGTCTATCAAAACTTTATTGGTTAGATTTAGCAGACAATCAACTTGAAGGGAGCATCCCGGTATCTGGTGACGACATATTTGGTCTTGATAACTTACACCATGCCAAACATTTTCATCTTGGGAAGAATAACCTCTCAGGCACTATCCCTCCTCAACTTTTTAGCTCGGAAATGGCTCTAATTCATTTGCTTTTGGAAAGCAATAAACTCGTTGGCAGCATTCCATCCACACTTGGACTAGTTCACAGTCTGGAGGTGGTGCGCTTAGATAGTAATTCATTAGATGGACCAGTGCCTCCAAACATCAACAATCTTACAAATGTTCGAGATCTGTACTTGTCCAACAATAAACTGTCAGGCCCCCCGCCAAACCTTACTGGAATGGATGCCCTCAGCTACCTGGACATGAGCAACAATAGTTTTAAACCATTGGATTTTCCAGAATGGTTTACTAATCTTAAGTCCTTAACGACATTAAAGATGGAGCGAACACAACTTCAAGGACAGGTTCCCTCTTCTTTGTTTGGACTTGTGAATTTACAGACTGTGGTGCTAAAAGACAACAAAATAAATGGAACCTTGGATGTCGGCTCCTCCTACAGCCGCCAGCTGCGACTTGTTGATTTGGAGACTAATTCAATTGACATCTTTAAGCAAAATGAAGTTCCAGGGGTCACGATAATACTTAAAGATAACCCAATTTGCCAAGAAATTGATGAACGAGCGGCATACTGCTCCTCTTATAAATCCAATTTCTCGTATTCAACACCACCAAATAACTGTGTACCTGATACCTGCAAATCAGGAAAGATTTCGAGCCCCAACTGTATATGCGCATATCCATATACAGGAACCTTAGCTTTAAGATCACCTTCCTTTTCGAACTTGGATAACAACACACGCTACCTAATGCTTGAGGAGTCTCTTATGCGGTATTTTAAGTCTCATTTTGTACCTGTGGATTCGGTTTCGGTTATGTTGAGCCATCAAATAATGGATCCAACTCAGTATCTCAAATTGAACTTACAAGCCTTCCCATCAGGACAAGATCATTTCAATCGAACAGGGACTTCACAAATTGGTTTTATGCTAAGCAACCAGACTTTTAAGCCTCCACAGCCGGATTTTGGACCATTTTATTTTCTTGCAGATAAATATGAACACTTTGGGAACGATGAAGGATTGCCTGAATCGGGTAAACATTCAAACATTGGAATCATAGTTGGGGCAGCAGTTGGTGGTTTGGTCTTGCTAGTGTTATTACTCTTATCTGGTCTTTATGCTTTCCGCCAGAAGAAAAGGGCCGAAAAGGCGATTGGACAAAGCAATCCTTTTAGACGCTGGGACACGGTTGACAGCAAGAGTGAAGTCCCTCAGTTGAAAGAAGCAAGAATGTTTTCTTTTGAAGACCTTAAAAAATGCACCAAAAGTTTTTCTCAAGTCAATGACATTGGATCTGGGGGTTTTGGGAAGGTTTATAAGGCAACCCTTCCCAATGGACAAGTGATAGCAATAAAAAGAGCACAAAAAGAATCTATGCAGGGAAAGCTTGAGTTTAAAGCGGAGATTGAACTTCTATCAAGGGTTCACCACAAGAATCTTGTCAGCCTTTTGGGCTTCTGCTTTGACCAAGGAGAGCAAATGCTGGTTTATGAGTATCTTCAAAATGGAAGTTTAAAGGACGCTCTCACAGGGAAGTCAGGAATTAGGTTAGATTGGATAAGAAGGCTAAAAATTGCCCTTGGTACTGCCCGGGGTCTGGCTTATCTTCACGAACTTGTTAATCCTCCCATCATACATAGGGACATCAAATCAAACAATATTTTGCTGGATGACCGCCTAAATTCCAAAGTTTCTGATTTTGGTCTCTCCAAGTCCATGATAGATTCAGAAAAAGATCATGTTACCACTCAAGTTAAAGGCACACTGGGTTACTTGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGTGACGTGTATAGCTTTGGAGTGCTAATGATGGAGCTGATATCTGCAAGAAAGCCATTGGAACGAGGGAAGTATATTGTGAAAGAGATTAGGAATGCACTGGATAAGACAAAAAGCTTATACGGTCTTCATGAATTTATTGATCCAGCCATTGGATTGTCGTCCACAACACTGATCGGTTTTGACAAGTTTGTGGATTTGGTCTTGAGATGTGTTGAAGAGTCAGGTGAAGAAAGGCCTAAAATGAGTGAAGTGGTAAGAGAAATTGAGAACATATTGAAGTCAGCTGGTACAAACCCTACTGAGGAATCACCCTCCATCTCTTCTAGCTATGAAGAGGTAAGCCGAGGGAGTTCCAGCCATCCTTATAACAGCAACGACACCTTTGATTTGAGTGCAGGGTCTCCATATCCAAAAGTTGACCCTGTCTAA 2877 0.4122 MSERILVVLLLALNCLLVAKGETADEDFTTLRSLISTWKNTPPNWVVSDPCDDWEGIKCKKTRVTSITLSSFGLGGPLSGDIGSLSELEILDLSYNKDFTGPLPQSIGELRKLSTLILVGCNFNGPIPDSIGNLQELLFLSLNSNSFSGPIPPSIGSLSKLYWLDLADNQLEGSIPVSGDDIFGLDNLHHAKHFHLGKNNLSGTIPPQLFSSEMALIHLLLESNKLVGSIPSTLGLVHSLEVVRLDSNSLDGPVPPNINNLTNVRDLYLSNNKLSGPPPNLTGMDALSYLDMSNNSFKPLDFPEWFTNLKSLTTLKMERTQLQGQVPSSLFGLVNLQTVVLKDNKINGTLDVGSSYSRQLRLVDLETNSIDIFKQNEVPGVTIILKDNPICQEIDERAAYCSSYKSNFSYSTPPNNCVPDTCKSGKISSPNCICAYPYTGTLALRSPSFSNLDNNTRYLMLEESLMRYFKSHFVPVDSVSVMLSHQIMDPTQYLKLNLQAFPSGQDHFNRTGTSQIGFMLSNQTFKPPQPDFGPFYFLADKYEHFGNDEGLPESGKHSNIGIIVGAAVGGLVLLVLLLLSGLYAFRQKKRAEKAIGQSNPFRRWDTVDSKSEVPQLKEARMFSFEDLKKCTKSFSQVNDIGSGGFGKVYKATLPNGQVIAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLLGFCFDQGEQMLVYEYLQNGSLKDALTGKSGIRLDWIRRLKIALGTARGLAYLHELVNPPIIHRDIKSNNILLDDRLNSKVSDFGLSKSMIDSEKDHVTTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVLMMELISARKPLERGKYIVKEIRNALDKTKSLYGLHEFIDPAIGLSSTTLIGFDKFVDLVLRCVEESGEERPKMSEVVREIENILKSAGTNPTEESPSISSSYEEVSRGSSSHPYNSNDTFDLSAGSPYPKVDPV 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02389 958 ProSitePatterns Protein kinases ATP-binding region signature. 640 662 IPR017441 GO:0005524
Phco8g02389 958 MobiDBLite consensus disorder prediction 909 947 - -
Phco8g02389 958 FunFam Leucine-rich repeat family protein 26 180 - -
Phco8g02389 958 Gene3D Ribonuclease Inhibitor 280 418 IPR032675 -
Phco8g02389 958 FunFam Leucine-rich repeat protein kinase family protein 600 709 - -
Phco8g02389 958 Pfam Protein tyrosine and serine/threonine kinase 637 903 IPR001245 GO:0004672|GO:0006468
Phco8g02389 958 SUPERFAMILY L domain-like 58 375 - -
Phco8g02389 958 Gene3D Ribonuclease Inhibitor 16 180 IPR032675 -
Phco8g02389 958 Gene3D Ribonuclease Inhibitor 181 279 IPR032675 -
Phco8g02389 958 SMART serkin_6 634 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02389 958 CDD STKc_IRAK 640 907 - -
Phco8g02389 958 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 710 920 - -
Phco8g02389 958 Gene3D Transferase(Phosphotransferase) domain 1 710 930 - -
Phco8g02389 958 Gene3D Phosphorylase Kinase; domain 1 604 709 - -
Phco8g02389 958 MobiDBLite consensus disorder prediction 908 958 - -
Phco8g02389 958 FunFam Leucine-rich repeat protein kinase family protein 182 280 - -
Phco8g02389 958 ProSiteProfiles Protein kinase domain profile. 634 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco8g02389 958 PANTHER RECEPTOR-LIKE PROTEIN 55 37 908 - -
Phco8g02389 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672|GO:0006468
Phco8g02389 958 SUPERFAMILY Protein kinase-like (PK-like) 620 938 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02389 Phco-Chr8 26587735 26593453 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Phco8g02389 PK_Tyr_Ser-Thr 8.8e-49 CL0016