Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02386 ATGGCAATTGCAGCCGCAAACTCATCACCCACCATGAGTCTCACCCATAGCCAGAGCCAGGAGGACGTCACCACCGCCTCCACCACCAACGACAACAACAACAGTAATAACAACAACGATAACAAGCCTGATGATCACGAGCATGACATGGTTATGCCCGGTTTTCGCTTCCACCCAACTGAAGAAGAGCTCGTGGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAGCTTATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCCTTGGCGGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGAAAGTATCGCAACGGTGATCGTCCCAATCGTGTTACTACCTCTGGGTATTGGAAGGCAACAGGAGCTGATAGGATGATCCGAACCGAGAATTTTCGCTCCATCGGCCTTAAGAAAACCCTAGTTTTCTATTCTGGCAAAGCTCCCAAAGGGATACGAACTAGTTGGATTATGAACGAGTATCGCTTGCCGCAACACGAAACCGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGCGTGTACAAGAGAGCTGGAGTAGAGGATCATCCCTCCCTCCCTCGCTGTCTCCCAACAAGGCCATCTTCATCAAGAGCTTCTTCACACTCCGAAACTAAGAAGCACAACGAGATGGTTCATCACAACATGGGATTTGTGGGACAATCGAAGCCAACTGAACACATAGTTGACAAAATGAATGAAACGGAAGCAAGCAGTGATGTCAACACGGCTCTTGGGCTTTCCAAATACAATGCTTACCGTGCTGCAATGGGTGCACTCAACACCACAATGGCACTTCCAGTTGTTCAAATGGATGAGGAAGCTCTGCTGATGATGCAGCATCAGCAGCAGTCTAAGCAAGCAGCAGCACATGCAGGTGCTCCTGGTATTGGCACAATCTTCTCTGCTGGGCCTTCTAGTTCCAATAACAATGGAGTTGTGAACATGGAGGATCTGAATAGGCTAATGAGTTACCAGCAGCAGTACTATAATGTTCAAAGCCATCCCAATCAGTTCTCTACTTTGCTGATGCAACCATCACCAGTAGTGTCTCTCAGCTCGCTACCGAATCCACTTCCAACTACCTTCTCTGACAGACTGTGGGAGTGGAATCCAATCCCTGAGCCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1227 0.4817 MAIAAANSSPTMSLTHSQSQEDVTTASTTNDNNNSNNNNDNKPDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSETKKHNEMVHHNMGFVGQSKPTEHIVDKMNETEASSDVNTALGLSKYNAYRAAMGALNTTMALPVVQMDEEALLMMQHQQQSKQAAAHAGAPGIGTIFSAGPSSSNNNGVVNMEDLNRLMSYQQQYYNVQSHPNQFSTLLMQPSPVVSLSSLPNPLPTTFSDRLWEWNPIPEPPNQEYSNMSFK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02386 408 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 48 288 - -
Phco8g02386 408 SUPERFAMILY NAC domain 51 197 IPR036093 GO:0003677|GO:0006355
Phco8g02386 408 MobiDBLite consensus disorder prediction 1 52 - -
Phco8g02386 408 FunFam NAC domain-containing protein 35 60 201 - -
Phco8g02386 408 Pfam No apical meristem (NAM) protein 53 177 IPR003441 GO:0003677|GO:0006355
Phco8g02386 408 MobiDBLite consensus disorder prediction 1 39 - -
Phco8g02386 408 Gene3D NAC domain 60 201 IPR036093 GO:0003677|GO:0006355
Phco8g02386 408 ProSiteProfiles NAC domain profile. 51 198 IPR003441 GO:0003677|GO:0006355
Phco8g02386 408 MobiDBLite consensus disorder prediction 204 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02386 Phco-Chr8 26504017 26506189 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco8g02386 NAM 4.2e-34 No_clan