Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02382 ATGGAAGGAGTACCGCACCCAGTACCCAGAACTGTCGAAGAGGTTTTCACCGACTTTAAGGGCAGACGCTCTGGTTTGATTAAGGCTCTCACCACTGACGTTGAAAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAATCTGTGTCTATATGGGTTTCCAAATGAAACCTGGGAAGTAAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCGGCATTAGGTATAAACTTTGCCAGGGATGGCATGCAAGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCGTGGCTGCTTGCTGTTGCTTTCTACTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACAATCTTCGAACTTGTGACTGGAAGTGTTAAGCAATCAAAGGATCAACCAGCTGCTCACAACAATGGTAGCAAATTCAAATCAAGTGGAAAGGTGTCTCGTCCGTCTGAGTCTCAAGCCAAGGGGATGAAGATGTCTGCACCACCTAAAGAGGAGGATGAGAGTGGTGAGGAAGAAGAAGAAGATGATGAACAAGGTGCAACATGTGGTGCTTGCGGTGATAATTATGGCACTGATGAATTCTGGATCTGTTGTGATATGTGTGAAAGATGGTTCCATGGTAAATGTGTTAAAATTACTCCCGCTAAGGCTGAGCACATCAAGCAATACAAGTGCCCCAGCTGCAGTAACAAGAGGGTTAGAGTTTGA 762 0.4528 MEGVPHPVPRTVEEVFTDFKGRRSGLIKALTTDVEKFYQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSVKQSKDQPAAHNNGSKFKSSGKVSRPSESQAKGMKMSAPPKEEDESGEEEEEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRVRV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02382 253 CDD PHD_AL_plant 200 249 IPR044104 -
Phco8g02382 253 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Phco8g02382 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Phco8g02382 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Phco8g02382 253 MobiDBLite consensus disorder prediction 144 199 - -
Phco8g02382 253 FunFam PHD finger alfin-like protein 192 248 - -
Phco8g02382 253 MobiDBLite consensus disorder prediction 183 198 - -
Phco8g02382 253 Pfam PHD-finger 200 249 IPR019787 -
Phco8g02382 253 SMART PHD_3 199 247 IPR001965 -
Phco8g02382 253 PANTHER CPG BINDING PROTEIN 9 252 IPR045104 GO:0006355|GO:0042393
Phco8g02382 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Phco8g02382 253 MobiDBLite consensus disorder prediction 144 171 - -
Phco8g02382 253 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02382 Phco-Chr8 26467183 26473780 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phco8g02382 Alfin 2e-69 No_clan