Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02310 ATGTTGTCTTGGTCAATAAAGAGAGTAGTTCAACTGTTGGAGTTGAATTCATTCCTTCCAGAGATGGTGGACAATGTTGGAGGCAGTTCCTCTAATCCTGAAAACAGTGGCATCAGGGAACAAGACTGTTTGTTGCCAATAGCCAATGTTGGGAGGATCATGAAGCAGATTCTGCCTCCTAACGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTATCAGAGTTTATAAGCTTTGTGACGAGTGAGGCATCAGAGAAGTGCAGGAAGGAGAGGAGGAAGACTGTGAACGGAGATGATATATGCTGGGCCTTAGGGTCGCTTGGTTTTGATGACTATGCAGAGCCATTGAGAAGGTATTTGCACAGATATAGAGAAGTAGAAGTAGATAGATCAGCCATCCAAGAGAGAGGAAATAGCCCCTCAAAAGAGAAGGATAATGAATTCTGA 459 0.4292 MLSWSIKRVVQLLELNSFLPEMVDNVGGSSSNPENSGIREQDCLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLHRYREVEVDRSAIQERGNSPSKEKDNEF 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02310 152 Gene3D Histone, subunit A 32 151 IPR009072 GO:0046982
Phco8g02310 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 108 IPR003958 -
Phco8g02310 152 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 31 138 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco8g02310 152 ProSitePatterns NF-YB/HAP3 subunit signature. 75 91 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco8g02310 152 FunFam Nuclear transcription factor Y subunit B-3 33 152 - -
Phco8g02310 152 SUPERFAMILY Histone-fold 41 150 IPR009072 GO:0046982
Phco8g02310 152 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Phco8g02310 152 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Phco8g02310 152 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02310 Phco-Chr8 25152886 25153344 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco8g02310 CBFD_NFYB_HMF 7.6e-27 CL0012