Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g02301 ATGGAGCGGTACGGCCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTGGCCGGCGCCGACGCTGGCATCGAAGAGTCCTCGTGGCAACTCGGATTAGCTGCTTCCGAATCGTACCCTCTGCGTCCCGATGAGGCTGATTGTATCTACTACTTGAGGACGGGATTTTGCGGTTACGGCACACGGTGTCGTTTCAACCATCCTCGCGACCGTGCTGCGGTCATTGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGGCAGCCTGTGTGCCAGTACTATATGAGGACGGGATCATGCAAGTTTGGTGCATCCTGCAAGTACCACCATCCTAGACAGGCAGCAGGCACTGCTACCCCTGTGCCACTTAATTATTATGGATATCCGTTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGGCAGTGCAAATTTGGTGCAACTTGTAAATTCCACCATCCCCAGCCTGCAGGTGTCCAAGTCATTGCACCATCACCGGTTCCCTCAGTTTCACATCTGCCTGTACCTGTACCTTCACCAGTATATCCAACTGTACAGCCCCAATCTGGCCCTTCGCAACAACAATATGGTGTCCTTGTTGCAAGACCACCTATGCTACCCGGCTCAGTAGTTCAGGGTCCGTATGGGCCTATGGTAGTGTCTCCTGCCATGGTCCCCTTTTCAGGATGGGGTCCTTATCAGGCTCCTGCAACAACCCCTGTAATTCCATCTAGCACTGCGTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCCGCTACCTTCGTCGGCAGCTACTTATACTGGACCTTATCAATCTTCTGGTTCCTCAATTGGTACTTCAGGTGCTATTCAGAAGGAGCATCCATTTCCAGAAAGACCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGCAAATTTGGTCCATCTTGCAGATATCATCATCCACCAGACAAGGGTGCACCTAAAGCAAATGTAATCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGAGCACAGCCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAATTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACTTAGTTATAGTCCATCTGCCTCTTCCCTGGCCGACATGCCTGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCTCCGTCATCTTCATCGTCCGAGTTGCGGCCTGAGCTTGGTGCAGGAGTCAGTAAGGAGTCCGTTTCATCCAGAATGTCTTCAATGAGCACATCAACCGGATCAGTTGGTTTGACCTTGTCAAGCGTTGGACACATCTCTCATTCAAGCACCCAACCATCTGCTCAAAGTTCCAGTTCTTCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1452 0.5138 MERYGRASEGSQSDPSPEWTVAGADAGIEESSWQLGLAASESYPLRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGTATPVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQVIAPSPVPSVSHLPVPVPSPVYPTVQPQSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWGPYQAPATTPVIPSSTASNVGSTQLYGITPLPSSAATYTGPYQSSGSSIGTSGAIQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKGAPKANVILSPVGLPLRPGAQPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGVSKESVSSRMSSMSTSTGSVGLTLSSVGHISHSSTQPSAQSSSSSATTSATTSSTVSHTSS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g02301 483 FunFam CCCH type zinc finger protein 302 387 - -
Phco8g02301 483 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Phco8g02301 483 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Phco8g02301 483 PANTHER PROTEIN PHOSPHATASE RELATED 37 412 - -
Phco8g02301 483 SUPERFAMILY CCCH zinc finger 353 380 IPR036855 GO:0046872
Phco8g02301 483 Gene3D - 303 383 - -
Phco8g02301 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Phco8g02301 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Phco8g02301 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Phco8g02301 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 377 IPR000571 GO:0046872
Phco8g02301 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Phco8g02301 483 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Phco8g02301 483 MobiDBLite consensus disorder prediction 426 483 - -
Phco8g02301 483 SUPERFAMILY CCCH zinc finger 307 332 IPR036855 GO:0046872
Phco8g02301 483 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Phco8g02301 483 MobiDBLite consensus disorder prediction 1 21 - -
Phco8g02301 483 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Phco8g02301 483 MobiDBLite consensus disorder prediction 405 483 - -
Phco8g02301 483 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Phco8g02301 483 Gene3D - 46 126 - -
Phco8g02301 483 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Phco8g02301 483 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Phco8g02301 483 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Phco8g02301 483 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Phco8g02301 483 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Phco8g02301 483 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Phco8g02301 483 Gene3D - 127 175 - -
Phco8g02301 483 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g02301 Phco-Chr8 24987545 24991571 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco8g02301 zf-CCCH 3.8e-07 CL0537